Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GQ367_RS07470 Genome accession   NZ_CP061299
Coordinates   1491428..1492510 (-) Length   360 a.a.
NCBI ID   WP_215290349.1    Uniprot ID   -
Organism   Polynucleobacter sp. MWH-CaK5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1486428..1497510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQ367_RS07440 (GQ367_07425) - 1486762..1487277 (-) 516 WP_305848918.1 pilin -
  GQ367_RS07445 (GQ367_07430) - 1487388..1488095 (-) 708 WP_215290344.1 TerC family protein -
  GQ367_RS07450 (GQ367_07435) sucD 1488172..1489065 (-) 894 WP_215290345.1 succinate--CoA ligase subunit alpha -
  GQ367_RS07455 (GQ367_07440) sucC 1489091..1490251 (-) 1161 WP_215290346.1 ADP-forming succinate--CoA ligase subunit beta -
  GQ367_RS07460 (GQ367_07445) - 1490359..1490937 (-) 579 WP_215290347.1 DUF2889 domain-containing protein -
  GQ367_RS07465 (GQ367_07450) recX 1490965..1491435 (-) 471 WP_215290348.1 recombination regulator RecX -
  GQ367_RS07470 (GQ367_07455) recA 1491428..1492510 (-) 1083 WP_215290349.1 recombinase RecA Machinery gene
  GQ367_RS07475 (GQ367_07460) - 1492703..1493404 (+) 702 WP_215290350.1 response regulator transcription factor -
  GQ367_RS07480 (GQ367_07465) - 1493413..1494903 (+) 1491 WP_215290351.1 sensor histidine kinase -
  GQ367_RS07485 (GQ367_07470) - 1494900..1495136 (+) 237 WP_215290352.1 DUF4212 domain-containing protein -
  GQ367_RS07490 (GQ367_07475) - 1495235..1496251 (+) 1017 WP_215290353.1 DUF6352 family protein -
  GQ367_RS07495 (GQ367_07480) - 1496354..1497385 (+) 1032 WP_215290354.1 methyltransferase domain-containing protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 38570.02 Da        Isoelectric Point: 4.9767

>NTDB_id=481695 GQ367_RS07470 WP_215290349.1 1491428..1492510(-) (recA) [Polynucleobacter sp. MWH-CaK5]
MEDQKKKSGSGPADIEGMSSDKQKALNAALAQIEKQFGKGSIMRLGDSDIGQDIQVVSTGSLGLDIALGVGGLARGRVIE
IYGPESSGKTTLTLHAVAEMQKLGGTCAFIDAEHALDVQYAAKLGVDVNNLLISQPDTGEQALEIADALVRSGSIDLIVI
DSVAALVPRAEIEGDMGDSLPGLQARLMSQALRKLTGTIKRTNSMVIFINQIRMKIGVMFGSPETTTGGNALKFYASMRL
DIRRIGSIKKGDDIVGNETRVKVVKNKVSPPFREAIFDIMYGEGISRQGEIIDLGVECDIVEKSGAWYSYNGERVGQGKD
NAREFLKENPEIAKEIEARVREKLGVNTGSVISPKEEADA

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=481695 GQ367_RS07470 WP_215290349.1 1491428..1492510(-) (recA) [Polynucleobacter sp. MWH-CaK5]
ATGGAAGACCAAAAAAAGAAATCTGGATCAGGCCCCGCTGATATTGAGGGAATGAGCTCTGATAAGCAAAAAGCCCTCAA
TGCAGCACTTGCTCAGATTGAAAAGCAATTTGGTAAGGGCTCCATCATGCGTCTTGGTGACAGTGATATTGGCCAGGATA
TTCAAGTGGTATCAACAGGCTCTTTAGGCTTGGACATTGCCTTGGGCGTTGGTGGTTTGGCCAGAGGTCGTGTGATTGAG
ATATACGGCCCAGAATCTTCAGGTAAAACAACTTTAACCTTGCACGCTGTTGCAGAAATGCAAAAACTGGGTGGTACATG
TGCGTTCATTGATGCTGAGCATGCTTTGGATGTGCAGTACGCAGCTAAATTGGGCGTCGATGTAAATAATTTATTGATTT
CTCAGCCGGACACTGGTGAGCAAGCATTGGAAATTGCTGATGCCTTGGTTCGTTCAGGCTCGATTGATTTGATCGTGATT
GACTCTGTGGCTGCCTTGGTGCCACGCGCTGAAATTGAAGGTGACATGGGTGATTCATTACCTGGTTTGCAAGCTCGTTT
GATGAGCCAAGCTTTGCGCAAATTAACAGGAACGATCAAGCGCACAAATTCAATGGTGATCTTCATTAACCAAATTCGTA
TGAAGATTGGTGTGATGTTTGGTTCACCTGAAACAACCACAGGTGGTAATGCTTTGAAGTTTTATGCCTCAATGCGTTTA
GACATTCGTCGCATCGGTAGCATCAAAAAAGGCGATGACATTGTTGGTAATGAAACACGTGTGAAGGTTGTGAAAAACAA
AGTATCTCCGCCATTCCGAGAGGCCATCTTTGACATCATGTATGGAGAGGGTATTTCTAGACAGGGTGAAATCATTGACT
TAGGTGTTGAGTGCGACATCGTTGAAAAGTCAGGCGCTTGGTACAGCTATAACGGCGAGCGTGTTGGTCAAGGTAAAGAT
AATGCACGTGAATTCTTAAAAGAGAATCCTGAGATTGCTAAAGAAATTGAAGCAAGGGTTCGTGAAAAATTAGGCGTTAA
CACTGGTAGTGTGATCAGCCCTAAAGAAGAAGCGGATGCCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(24-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

79.666

99.722

0.794
  recA Neisseria gonorrhoeae strain FA1090

71.637

95

0.681
  recA Neisseria gonorrhoeae MS11

71.637

95

0.681
  recA Neisseria gonorrhoeae MS11

71.637

95

0.681
  recA Acinetobacter baumannii D1279779

70.725

95.833

0.678
  recA Pseudomonas stutzeri DSM 10701

69.364

96.111

0.667
  recA Acinetobacter baylyi ADP1

72.783

90.833

0.661
  recA Glaesserella parasuis strain SC1401

67.045

97.778

0.656
  recA Vibrio cholerae strain A1552

70.642

90.833

0.642
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.642

90.833

0.642
  recA Bacillus subtilis subsp. subtilis str. 168

66.366

92.5

0.614
  recA Helicobacter pylori 26695

64.412

94.444

0.608
  recA Helicobacter pylori strain NCTC11637

64.118

94.444

0.606
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.742

91.389

0.592
  recA Streptococcus pneumoniae TIGR4

60.34

98.056

0.592
  recA Streptococcus pneumoniae Rx1

60.34

98.056

0.592
  recA Streptococcus pneumoniae D39

60.34

98.056

0.592
  recA Streptococcus pneumoniae R6

60.34

98.056

0.592
  recA Streptococcus mitis NCTC 12261

61.739

95.833

0.592
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.545

91.667

0.592
  recA Streptococcus mitis SK321

61.976

92.778

0.575
  recA Streptococcus mutans UA159

59.71

95.833

0.572
  recA Latilactobacillus sakei subsp. sakei 23K

62.691

90.833

0.569
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.824

94.722

0.567
  recA Streptococcus pyogenes NZ131

61.094

91.389

0.558
  recA Lactococcus lactis subsp. cremoris KW2

59.517

91.944

0.547