Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AOC19_RS08095 Genome accession   NZ_CP061297
Coordinates   1612743..1613831 (-) Length   362 a.a.
NCBI ID   WP_215375809.1    Uniprot ID   -
Organism   Polynucleobacter asymbioticus strain MWH-MoIso1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1607743..1618831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOC19_RS08065 (AOC19_08070) moaC 1607981..1608454 (+) 474 WP_215375797.1 cyclic pyranopterin monophosphate synthase MoaC -
  AOC19_RS08070 (AOC19_08075) - 1608530..1609027 (-) 498 WP_285896591.1 pilin -
  AOC19_RS08075 (AOC19_08080) - 1609153..1609851 (-) 699 WP_215375803.1 TerC family protein -
  AOC19_RS08080 (AOC19_08085) sucD 1609933..1610826 (-) 894 WP_015421981.1 succinate--CoA ligase subunit alpha -
  AOC19_RS08085 (AOC19_08090) sucC 1610842..1612011 (-) 1170 WP_215354929.1 ADP-forming succinate--CoA ligase subunit beta -
  AOC19_RS08090 (AOC19_08095) recX 1612199..1612735 (-) 537 WP_215375806.1 recombination regulator RecX -
  AOC19_RS08095 (AOC19_08100) recA 1612743..1613831 (-) 1089 WP_215375809.1 recombinase RecA Machinery gene
  AOC19_RS08100 (AOC19_08105) - 1613950..1614483 (-) 534 WP_215375812.1 DUF2878 domain-containing protein -
  AOC19_RS08110 (AOC19_08115) - 1614681..1615088 (-) 408 WP_215375816.1 hypothetical protein -
  AOC19_RS08115 (AOC19_08120) - 1615138..1615749 (+) 612 WP_215375818.1 MOSC domain-containing protein -
  AOC19_RS08120 (AOC19_08125) - 1615830..1617500 (-) 1671 WP_215375821.1 MFS transporter -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 38684.19 Da        Isoelectric Point: 4.9703

>NTDB_id=481671 AOC19_RS08095 WP_215375809.1 1612743..1613831(-) (recA) [Polynucleobacter asymbioticus strain MWH-MoIso1]
MALDDKKKSASSEFDGMSGDKQKALTAALAQIEKQFGKGSIMRLGDAEIHQDIQVVSSGSLGLDIALGVGGLARGRVIEI
YGPESSGKTTLTLHAIAEMQKIGGTCAFIDAEHALDVQYASRLGVDVNNLLISQPDTGEQALEIADALVRSGSIDLIVID
SVAALVPRAEIEGDMGDSLPGLQARLMSQALRKLTGAIKRTNTTVIFINQIRMKIGVMFGSPETTTGGNALKFYASMRLD
IRRIGSIKKGDEVVGNETRVKVVKNKVSPPFREAIFDIMYGAGISREGEIIDMGVEADIVEKSGSWYAYNGDRIGQGKDN
VREFLKENPAIAQDIEAKIRAKLGVKAGTAVVSDVLSEEEEA

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=481671 AOC19_RS08095 WP_215375809.1 1612743..1613831(-) (recA) [Polynucleobacter asymbioticus strain MWH-MoIso1]
ATGGCCTTGGATGATAAGAAAAAATCAGCCTCATCAGAATTTGACGGCATGAGCGGAGACAAGCAAAAGGCATTGACTGC
AGCCTTGGCGCAAATTGAGAAGCAATTTGGCAAGGGCTCAATCATGAGATTGGGCGATGCAGAGATTCATCAAGATATTC
AGGTCGTTTCTAGTGGTTCATTGGGTTTAGATATTGCACTTGGAGTTGGCGGTTTAGCCCGTGGGCGCGTGATTGAGATT
TACGGCCCAGAATCTTCAGGTAAGACAACATTAACTTTGCATGCCATTGCAGAGATGCAAAAGATTGGCGGAACTTGTGC
CTTTATTGATGCTGAGCACGCCTTAGATGTTCAATATGCTTCACGCTTAGGTGTGGACGTCAATAATTTATTGATCTCAC
AACCAGATACTGGTGAGCAAGCCTTGGAAATTGCTGACGCTCTAGTGCGCTCCGGTTCCATTGACTTGATTGTTATTGAC
TCTGTAGCGGCCTTGGTGCCAAGGGCGGAGATTGAGGGTGATATGGGCGATTCATTGCCAGGTCTCCAGGCCCGCCTGAT
GAGCCAAGCCTTGCGTAAGCTGACTGGCGCAATCAAGCGTACCAATACAACAGTGATCTTTATTAACCAGATTCGTATGA
AGATTGGTGTGATGTTTGGTTCACCTGAGACAACTACTGGTGGCAATGCACTCAAGTTTTACGCTTCTATGCGTTTGGAT
ATTCGTCGTATCGGTAGTATCAAGAAAGGCGATGAAGTGGTTGGTAACGAGACCCGCGTGAAGGTTGTAAAGAACAAGGT
ATCCCCACCATTCCGTGAAGCCATCTTCGACATCATGTACGGCGCTGGAATTTCCAGAGAAGGCGAAATTATTGATATGG
GTGTTGAAGCCGATATCGTTGAAAAGTCTGGTTCTTGGTATGCCTATAACGGTGATCGCATTGGTCAAGGAAAAGATAAT
GTGCGCGAGTTCTTAAAAGAGAACCCAGCTATTGCTCAAGACATTGAAGCCAAGATTCGTGCGAAATTGGGCGTCAAGGC
TGGTACAGCAGTGGTGAGCGACGTTTTGAGTGAAGAAGAGGAAGCGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(23-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

79.666

99.171

0.79
  recA Neisseria gonorrhoeae MS11

73.636

91.16

0.671
  recA Neisseria gonorrhoeae MS11

73.636

91.16

0.671
  recA Neisseria gonorrhoeae strain FA1090

73.636

91.16

0.671
  recA Acinetobacter baylyi ADP1

69.477

95.028

0.66
  recA Acinetobacter baumannii D1279779

69.477

95.028

0.66
  recA Pseudomonas stutzeri DSM 10701

69.617

93.646

0.652
  recA Vibrio cholerae strain A1552

69.725

90.331

0.63
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.725

90.331

0.63
  recA Glaesserella parasuis strain SC1401

69.969

89.227

0.624
  recA Helicobacter pylori 26695

64.431

94.751

0.61
  recA Helicobacter pylori strain NCTC11637

64.14

94.751

0.608
  recA Bacillus subtilis subsp. subtilis str. 168

67.178

90.055

0.605
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.035

94.475

0.605
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.653

91.436

0.591
  recA Latilactobacillus sakei subsp. sakei 23K

62.577

90.055

0.564
  recA Streptococcus pneumoniae D39

60.417

92.818

0.561
  recA Streptococcus pneumoniae Rx1

60.417

92.818

0.561
  recA Streptococcus pneumoniae R6

60.417

92.818

0.561
  recA Streptococcus pneumoniae TIGR4

60.417

92.818

0.561
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.551

95.304

0.558
  recA Streptococcus pyogenes NZ131

58.43

95.028

0.555
  recA Streptococcus mitis NCTC 12261

59.524

92.818

0.552
  recA Streptococcus mitis SK321

60

91.16

0.547
  recA Lactococcus lactis subsp. cremoris KW2

60

91.16

0.547
  recA Streptococcus mutans UA159

59.697

91.16

0.544