Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ICV01_RS08035 Genome accession   NZ_CP061294
Coordinates   1584131..1585213 (-) Length   360 a.a.
NCBI ID   WP_215287277.1    Uniprot ID   -
Organism   Polynucleobacter sp. MWH-Spelu-300-X4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1579131..1590213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICV01_RS08005 (ICV01_07995) - 1579473..1579973 (-) 501 WP_215287270.1 pilin -
  ICV01_RS08010 (ICV01_08000) - 1580089..1580787 (-) 699 WP_215287272.1 TerC family protein -
  ICV01_RS08015 (ICV01_08005) sucD 1580864..1581757 (-) 894 WP_088813015.1 succinate--CoA ligase subunit alpha -
  ICV01_RS08020 (ICV01_08010) sucC 1581776..1582936 (-) 1161 WP_215287274.1 ADP-forming succinate--CoA ligase subunit beta -
  ICV01_RS08025 (ICV01_08015) - 1583040..1583630 (-) 591 WP_251369341.1 DUF2889 domain-containing protein -
  ICV01_RS08030 (ICV01_08020) recX 1583662..1584138 (-) 477 WP_215287276.1 recombination regulator RecX -
  ICV01_RS08035 (ICV01_08025) recA 1584131..1585213 (-) 1083 WP_215287277.1 recombinase RecA Machinery gene
  ICV01_RS08040 (ICV01_08030) - 1585407..1586102 (+) 696 WP_215287278.1 response regulator transcription factor -
  ICV01_RS08045 (ICV01_08035) - 1586108..1587598 (+) 1491 WP_215287280.1 sensor histidine kinase -
  ICV01_RS08050 (ICV01_08040) - 1587595..1587831 (+) 237 WP_215287281.1 DUF4212 domain-containing protein -
  ICV01_RS08055 (ICV01_08045) - 1587934..1589601 (+) 1668 WP_251369342.1 MFS transporter -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 38511.08 Da        Isoelectric Point: 5.3496

>NTDB_id=481638 ICV01_RS08035 WP_215287277.1 1584131..1585213(-) (recA) [Polynucleobacter sp. MWH-Spelu-300-X4]
MEDHKKKSGSASTDIDGMSADKQKALNAALAQIEKQFGKGSIMRLGDSDIAQDIQVVSTGSLGLDIALGVGGLARGRVIE
IYGPESSGKTTLTLHAVAEMQKLGGTCAFIDAEHALDVQYAAKLGVDVNNLLISQPDTGEQALEIADALVRSGSIDLIVV
DSVAALVPRAEIEGDMGDSLPGLQARLMSQALRKLTGTIKRTNSMVIFINQIRMKIGVMFGSPETTTGGNALKFYASMRL
DIRRIGSIKKGDEVVGNETRVKVVKNKVSPPFREAIFDIMYGEGISRQGEIIDLGVECDIVEKSGAWYSYKGDRVGQGKD
NAREFLKENPEIAKEIEAKIREKLGVKGGSIISAQEIADA

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=481638 ICV01_RS08035 WP_215287277.1 1584131..1585213(-) (recA) [Polynucleobacter sp. MWH-Spelu-300-X4]
ATGGAAGACCATAAGAAGAAATCTGGCAGCGCTTCAACTGACATTGATGGTATGAGCGCTGATAAGCAAAAAGCATTAAA
TGCGGCCTTAGCTCAGATTGAGAAGCAATTTGGTAAAGGTTCCATCATGCGTTTGGGTGATAGTGATATTGCTCAAGATA
TTCAGGTGGTATCGACGGGCTCTTTAGGCCTTGATATCGCTCTAGGCGTTGGTGGCCTAGCCCGTGGTCGCGTGATTGAA
ATTTATGGCCCTGAATCTTCAGGTAAAACGACTTTAACTTTGCACGCTGTAGCGGAAATGCAGAAGTTAGGCGGTACATG
TGCCTTTATTGATGCTGAACATGCTTTAGATGTTCAATATGCCGCTAAATTAGGCGTTGATGTTAATAATTTATTAATCT
CTCAACCTGATACAGGTGAGCAAGCATTAGAAATCGCTGATGCCTTGGTGAGGTCTGGATCCATTGATTTGATTGTGGTT
GACTCTGTTGCAGCGCTTGTTCCTAGAGCGGAAATTGAAGGTGATATGGGTGATTCATTGCCTGGATTGCAAGCTAGATT
AATGAGCCAAGCGCTAAGAAAGTTAACAGGTACGATCAAGCGTACGAATTCAATGGTTATCTTTATTAACCAAATTCGTA
TGAAGATTGGCGTTATGTTTGGTTCACCAGAAACCACAACTGGCGGTAACGCTTTAAAGTTTTACGCTTCTATGCGCTTA
GATATTCGTCGTATTGGCAGCATTAAGAAGGGCGACGAGGTAGTGGGCAATGAAACACGTGTGAAAGTGGTTAAAAATAA
AGTTTCCCCTCCATTTAGAGAGGCTATCTTTGACATCATGTATGGCGAGGGTATTTCTCGCCAGGGCGAAATTATTGATT
TAGGTGTTGAATGCGATATCGTTGAAAAGTCAGGCGCCTGGTACAGCTATAAAGGTGATCGTGTTGGTCAAGGTAAAGAC
AATGCCCGCGAATTCTTAAAAGAAAACCCTGAAATTGCTAAAGAAATTGAAGCAAAAATTCGTGAGAAATTAGGGGTTAA
GGGCGGATCTATTATTTCTGCTCAAGAAATCGCTGATGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(24-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

79.722

100

0.797
  recA Neisseria gonorrhoeae MS11

74.848

91.667

0.686
  recA Neisseria gonorrhoeae MS11

74.848

91.667

0.686
  recA Neisseria gonorrhoeae strain FA1090

74.848

91.667

0.686
  recA Acinetobacter baumannii D1279779

71.014

95.833

0.681
  recA Pseudomonas stutzeri DSM 10701

70.52

96.111

0.678
  recA Acinetobacter baylyi ADP1

71.386

94.167

0.672
  recA Glaesserella parasuis strain SC1401

66.949

98.333

0.658
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.171

90.833

0.656
  recA Vibrio cholerae strain A1552

72.171

90.833

0.656
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.62

95

0.614
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65

94.444

0.614
  recA Bacillus subtilis subsp. subtilis str. 168

66.066

92.5

0.611
  recA Helicobacter pylori 26695

67.178

90.556

0.608
  recA Helicobacter pylori strain NCTC11637

66.871

90.556

0.606
  recA Streptococcus pneumoniae R6

62.463

94.722

0.592
  recA Streptococcus pneumoniae Rx1

62.463

94.722

0.592
  recA Streptococcus pneumoniae D39

62.463

94.722

0.592
  recA Streptococcus pneumoniae TIGR4

62.463

94.722

0.592
  recA Streptococcus mitis NCTC 12261

61.449

95.833

0.589
  recA Streptococcus mitis SK321

62.538

91.944

0.575
  recA Latilactobacillus sakei subsp. sakei 23K

62.577

90.556

0.567
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.238

94.722

0.561
  recA Streptococcus mutans UA159

60.606

91.667

0.556
  recA Streptococcus pyogenes NZ131

60.79

91.389

0.556
  recA Lactococcus lactis subsp. cremoris KW2

58.912

91.944

0.542