Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FD961_RS08215 Genome accession   NZ_CP061291
Coordinates   1648739..1649830 (-) Length   363 a.a.
NCBI ID   WP_201721694.1    Uniprot ID   -
Organism   Polynucleobacter sp. TSB-Sco08W16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1643739..1654830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FD961_RS08190 (FD961_08190) - 1644519..1645040 (-) 522 WP_215393421.1 pilin -
  FD961_RS08195 (FD961_08195) - 1645162..1645866 (-) 705 WP_215393422.1 TerC family protein -
  FD961_RS08200 (FD961_08200) sucD 1645950..1646843 (-) 894 WP_215393423.1 succinate--CoA ligase subunit alpha -
  FD961_RS08205 (FD961_08205) sucC 1646859..1648028 (-) 1170 WP_215393424.1 ADP-forming succinate--CoA ligase subunit beta -
  FD961_RS08210 (FD961_08210) recX 1648216..1648734 (-) 519 WP_215393425.1 recombination regulator RecX -
  FD961_RS08215 (FD961_08215) recA 1648739..1649830 (-) 1092 WP_201721694.1 recombinase RecA Machinery gene
  FD961_RS08220 (FD961_08220) - 1649950..1650483 (-) 534 WP_215393426.1 DUF2878 domain-containing protein -
  FD961_RS08230 (FD961_08230) - 1650676..1651083 (-) 408 WP_215393427.1 hypothetical protein -
  FD961_RS08235 (FD961_08235) - 1651134..1651745 (+) 612 WP_215393428.1 MOSC domain-containing protein -
  FD961_RS08240 (FD961_08240) - 1651810..1653480 (-) 1671 WP_215393429.1 MFS transporter -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 38953.45 Da        Isoelectric Point: 4.8361

>NTDB_id=481603 FD961_RS08215 WP_201721694.1 1648739..1649830(-) (recA) [Polynucleobacter sp. TSB-Sco08W16]
MALDDKRKSASSEFEGMSGDKQKALTAALAQIEKQFGKGSIMRLGDAEISQDIQVVSSGSLGLDIALGVGGLARGRVIEI
YGPESSGKTTLTLHAIAEMQKLGGTCAFIDAEHALDVQYASRLGVDVNNLLISQPDTGEQALEIADALVRSGSIDLIVID
SVAALVPKAEIEGDMGDSLPGLQARLMSQALRKLTGAIKRTNTTVIFINQIRMKIGVMFGSPETTTGGNALKFYASMRLD
IRRIGSIKKGDEVVGNETRVKVVKNKVSPPFREAIFDIMYGAGISREGEIIDMGVEADLVEKSGSWYSYNGDRIGQGKDN
VREFLKENPAIAKDIETRIREKLGVKSGSAVVTDVLSEEEEVE

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=481603 FD961_RS08215 WP_201721694.1 1648739..1649830(-) (recA) [Polynucleobacter sp. TSB-Sco08W16]
ATGGCCTTGGATGACAAAAGAAAATCAGCCTCCTCAGAATTTGAGGGAATGAGCGGAGACAAACAAAAAGCATTAACAGC
AGCCTTGGCACAAATTGAGAAGCAATTTGGCAAGGGTTCAATCATGAGATTGGGCGATGCTGAAATTAGTCAAGACATTC
AAGTGGTGTCGAGTGGTTCACTCGGTTTGGATATCGCTTTGGGTGTTGGTGGTCTCGCACGCGGTCGCGTGATTGAAATC
TACGGCCCAGAATCATCAGGTAAAACTACTTTAACTTTGCATGCGATTGCAGAAATGCAAAAGCTTGGTGGTACTTGTGC
GTTTATCGATGCTGAGCATGCATTGGATGTGCAGTACGCATCACGCCTTGGTGTAGATGTAAATAATTTATTGATCTCTC
AACCGGATACTGGTGAACAGGCTTTAGAGATTGCTGATGCTTTAGTGCGTTCAGGATCCATTGATTTAATTGTCATTGAC
TCGGTTGCCGCATTGGTTCCAAAGGCTGAGATTGAAGGCGATATGGGCGATTCATTACCAGGCCTGCAGGCTCGTTTGAT
GAGTCAAGCCTTACGTAAATTGACTGGTGCCATTAAGCGTACCAATACAACGGTAATCTTCATCAATCAAATTCGTATGA
AAATTGGCGTGATGTTTGGTTCTCCAGAAACCACTACTGGTGGTAACGCGCTCAAGTTCTATGCTTCTATGCGCTTGGAT
ATTCGTCGCATCGGTAGCATCAAAAAAGGTGATGAGGTTGTCGGTAATGAAACTCGTGTGAAGGTTGTCAAGAACAAGGT
TTCTCCCCCATTCCGTGAAGCTATTTTTGACATCATGTATGGTGCCGGCATTTCTAGAGAAGGTGAAATCATCGATATGG
GTGTTGAAGCCGATCTAGTTGAGAAGTCAGGCTCTTGGTATAGCTATAACGGCGATCGCATTGGTCAGGGTAAAGACAAT
GTACGTGAGTTTTTGAAAGAAAATCCAGCAATTGCAAAAGATATCGAAACAAGAATCCGCGAGAAATTGGGCGTTAAGTC
CGGTTCAGCAGTAGTGACTGACGTGCTCAGCGAGGAAGAGGAAGTCGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(23-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

80.223

98.898

0.793
  recA Neisseria gonorrhoeae MS11

73.03

90.909

0.664
  recA Neisseria gonorrhoeae MS11

73.03

90.909

0.664
  recA Neisseria gonorrhoeae strain FA1090

73.03

90.909

0.664
  recA Acinetobacter baumannii D1279779

69.767

94.766

0.661
  recA Acinetobacter baylyi ADP1

69.477

94.766

0.658
  recA Pseudomonas stutzeri DSM 10701

69.912

93.388

0.653
  recA Vibrio cholerae O1 biovar El Tor strain E7946

67.435

95.592

0.645
  recA Vibrio cholerae strain A1552

67.435

95.592

0.645
  recA Glaesserella parasuis strain SC1401

69.184

91.185

0.631
  recA Bacillus subtilis subsp. subtilis str. 168

66.867

91.46

0.612
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.035

94.215

0.603
  recA Helicobacter pylori 26695

66.871

89.807

0.601
  recA Helicobacter pylori strain NCTC11637

66.564

89.807

0.598
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.955

91.185

0.592
  recA Streptococcus pneumoniae R6

60.119

92.562

0.556
  recA Streptococcus pneumoniae Rx1

60.119

92.562

0.556
  recA Streptococcus pneumoniae D39

60.119

92.562

0.556
  recA Streptococcus pneumoniae TIGR4

60.119

92.562

0.556
  recA Streptococcus mitis NCTC 12261

57.759

95.868

0.554
  recA Latilactobacillus sakei subsp. sakei 23K

61.656

89.807

0.554
  recA Streptococcus mutans UA159

57.971

95.041

0.551
  recA Streptococcus mitis SK321

59.459

91.736

0.545
  recA Lactococcus lactis subsp. cremoris KW2

58.631

92.562

0.543
  recA Streptococcus pyogenes NZ131

58.967

90.634

0.534
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.436

88.43

0.534