Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   C2756_RS09580 Genome accession   NZ_CP061289
Coordinates   1848005..1849096 (-) Length   363 a.a.
NCBI ID   WP_215295804.1    Uniprot ID   -
Organism   Polynucleobacter sp. UB-Siik-W21     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1843005..1854096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2756_RS09550 (C2756_09535) moaC 1843220..1843696 (+) 477 WP_215318935.1 cyclic pyranopterin monophosphate synthase MoaC -
  C2756_RS09555 (C2756_09540) - 1843759..1844280 (-) 522 WP_215318937.1 pilin -
  C2756_RS09560 (C2756_09545) - 1844402..1845106 (-) 705 WP_215318939.1 TerC family protein -
  C2756_RS09565 (C2756_09550) sucD 1845202..1846095 (-) 894 WP_215295801.1 succinate--CoA ligase subunit alpha -
  C2756_RS09570 (C2756_09555) sucC 1846111..1847280 (-) 1170 WP_215318941.1 ADP-forming succinate--CoA ligase subunit beta -
  C2756_RS09575 (C2756_09560) recX 1847469..1847987 (-) 519 WP_215318943.1 recombination regulator RecX -
  C2756_RS09580 (C2756_09565) recA 1848005..1849096 (-) 1092 WP_215295804.1 recombinase RecA Machinery gene
  C2756_RS09585 (C2756_09570) - 1849216..1849749 (-) 534 WP_215295805.1 DUF2878 domain-containing protein -
  C2756_RS09595 (C2756_09580) - 1850074..1850463 (+) 390 WP_215318945.1 hypothetical protein -
  C2756_RS09600 (C2756_09585) - 1850478..1851047 (-) 570 WP_251372044.1 SRPBCC family protein -
  C2756_RS09605 (C2756_09590) - 1851325..1851645 (+) 321 WP_215318946.1 DUF6150 family protein -
  C2756_RS09610 (C2756_09595) - 1851662..1852273 (+) 612 WP_215318948.1 MOSC domain-containing protein -
  C2756_RS09615 (C2756_09600) - 1852338..1854008 (-) 1671 WP_215318950.1 MFS transporter -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 38881.38 Da        Isoelectric Point: 4.8324

>NTDB_id=481592 C2756_RS09580 WP_215295804.1 1848005..1849096(-) (recA) [Polynucleobacter sp. UB-Siik-W21]
MALDDKRKSASSEFEGMSGDKQKALTAALAQIEKQFGKGSIMRLGDAEISQDIQVVSSGSLGLDIALGVGGLARGRVIEI
YGPESSGKTTLTLHAIAEMQKLGGTCAFIDAEHALDVQYASRLGVDVNNLLISQPDTGEQALEIADALVRSGSIDLIVID
SVAALVPKAEIEGDMGDSLPGLQARLMSQALRKLTGAIKRTNTTVIFINQIRMKIGVMFGSPETTTGGNALKFYASMRLD
IRRIGSIKKGDEVVGNETRVKVVKNKVSPPFREAIFDIMYGAGISREGEIIDMGVEADIVEKSGSWYSYNGDRIGQGKDN
VRDFLKENPAIAKDIEAKIREKLGVKSGSAVVTDVLSEEEEVE

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=481592 C2756_RS09580 WP_215295804.1 1848005..1849096(-) (recA) [Polynucleobacter sp. UB-Siik-W21]
ATGGCCTTAGATGACAAAAGAAAATCAGCTTCCTCAGAATTTGAGGGGATGAGTGGAGATAAGCAAAAGGCGTTAACAGC
AGCCTTAGCGCAAATTGAGAAACAATTTGGCAAGGGCTCGATCATGAGATTGGGCGATGCTGAAATTAGCCAAGATATTC
AAGTGGTATCGAGTGGCTCACTTGGCTTGGATATTGCCTTGGGAGTTGGCGGTCTAGCACGTGGTCGTGTGATTGAAATC
TACGGTCCAGAATCATCCGGTAAAACAACCTTAACTTTGCATGCGATTGCAGAAATGCAAAAGCTTGGTGGTACTTGCGC
ATTTATCGACGCTGAACATGCTTTAGATGTTCAGTACGCATCCCGCTTAGGTGTGGATGTGAATAATTTATTGATTTCTC
AACCAGACACTGGTGAGCAAGCTTTAGAAATCGCAGATGCTCTAGTGCGCTCCGGCTCAATCGATTTGATCGTCATTGAC
TCCGTTGCAGCTTTGGTTCCCAAAGCTGAGATTGAAGGCGATATGGGCGACTCATTGCCCGGCTTGCAAGCTCGCTTGAT
GAGTCAAGCATTGCGTAAATTGACTGGCGCTATCAAGCGCACTAACACCACCGTGATCTTTATTAACCAAATTCGCATGA
AGATTGGTGTGATGTTTGGTTCGCCAGAGACTACTACTGGTGGTAATGCACTGAAGTTCTACGCTTCTATGCGCTTAGAT
ATTCGCCGTATTGGTAGCATTAAGAAGGGTGACGAAGTCGTTGGTAATGAAACCCGTGTGAAGGTTGTGAAGAACAAAGT
TTCTCCTCCATTCCGCGAGGCCATTTTTGACATCATGTACGGTGCCGGTATTTCAAGAGAGGGTGAAATCATTGATATGG
GTGTTGAAGCCGATATCGTTGAAAAGTCTGGCTCTTGGTATAGCTACAACGGCGATCGTATTGGTCAGGGTAAAGACAAT
GTGCGCGATTTCCTGAAAGAGAATCCAGCGATTGCTAAAGATATCGAAGCAAAAATTCGCGAGAAACTAGGCGTCAAATC
TGGTTCTGCAGTAGTGACCGATGTCTTAAGTGAGGAAGAGGAAGTCGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(23-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

80.223

98.898

0.793
  recA Neisseria gonorrhoeae MS11

73.939

90.909

0.672
  recA Neisseria gonorrhoeae MS11

73.939

90.909

0.672
  recA Neisseria gonorrhoeae strain FA1090

73.939

90.909

0.672
  recA Acinetobacter baylyi ADP1

70.058

94.766

0.664
  recA Acinetobacter baumannii D1279779

70.058

94.766

0.664
  recA Pseudomonas stutzeri DSM 10701

69.617

93.388

0.65
  recA Vibrio cholerae O1 biovar El Tor strain E7946

67.723

95.592

0.647
  recA Vibrio cholerae strain A1552

67.723

95.592

0.647
  recA Glaesserella parasuis strain SC1401

69.184

91.185

0.631
  recA Bacillus subtilis subsp. subtilis str. 168

67.169

91.46

0.614
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.62

94.215

0.609
  recA Helicobacter pylori 26695

67.485

89.807

0.606
  recA Helicobacter pylori strain NCTC11637

67.178

89.807

0.603
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.257

91.185

0.595
  recA Streptococcus pneumoniae D39

60.417

92.562

0.559
  recA Streptococcus pneumoniae Rx1

60.417

92.562

0.559
  recA Streptococcus pneumoniae R6

60.417

92.562

0.559
  recA Streptococcus pneumoniae TIGR4

60.417

92.562

0.559
  recA Latilactobacillus sakei subsp. sakei 23K

62.27

89.807

0.559
  recA Streptococcus mutans UA159

58.551

95.041

0.556
  recA Streptococcus mitis NCTC 12261

58.046

95.868

0.556
  recA Streptococcus mitis SK321

59.76

91.736

0.548
  recA Lactococcus lactis subsp. cremoris KW2

59.226

92.562

0.548
  recA Streptococcus pyogenes NZ131

59.574

90.634

0.54
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.436

88.43

0.534