Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ICW03_RS09760 Genome accession   NZ_CP061287
Coordinates   1887227..1888318 (-) Length   363 a.a.
NCBI ID   WP_215347741.1    Uniprot ID   -
Organism   Polynucleobacter sp. MWH-Aus1W21     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1882227..1893318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICW03_RS09735 (ICW03_09730) - 1882965..1883495 (-) 531 WP_215347734.1 pilin -
  ICW03_RS09740 (ICW03_09735) - 1883617..1884321 (-) 705 WP_215347736.1 TerC family protein -
  ICW03_RS09745 (ICW03_09740) sucD 1884421..1885314 (-) 894 WP_215347738.1 succinate--CoA ligase subunit alpha -
  ICW03_RS09750 (ICW03_09745) sucC 1885330..1886499 (-) 1170 WP_011903667.1 ADP-forming succinate--CoA ligase subunit beta -
  ICW03_RS09755 (ICW03_09750) recX 1886688..1887209 (-) 522 WP_215347739.1 recombination regulator RecX -
  ICW03_RS09760 (ICW03_09755) recA 1887227..1888318 (-) 1092 WP_215347741.1 recombinase RecA Machinery gene
  ICW03_RS09765 (ICW03_09760) - 1888427..1888969 (-) 543 WP_215347743.1 DUF2878 domain-containing protein -
  ICW03_RS09770 (ICW03_09765) - 1889080..1890078 (+) 999 WP_215347745.1 tripartite tricarboxylate transporter substrate binding protein -
  ICW03_RS09780 (ICW03_09775) - 1890343..1890771 (-) 429 WP_215347747.1 hypothetical protein -
  ICW03_RS09785 (ICW03_09780) - 1890768..1891661 (-) 894 WP_215347749.1 exonuclease domain-containing protein -
  ICW03_RS09790 (ICW03_09785) - 1891754..1893025 (+) 1272 WP_251374391.1 tyrosine-type recombinase/integrase -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 38920.46 Da        Isoelectric Point: 4.8361

>NTDB_id=481582 ICW03_RS09760 WP_215347741.1 1887227..1888318(-) (recA) [Polynucleobacter sp. MWH-Aus1W21]
MALDDKRKSASSEFEGMSGDKQKALTAALAQIEKQFGKGSIMRLGDAEISQDIQVVSSGSLGLDIALGVGGLARGRVIEI
YGPESSGKTTLTLHAIAEMQKLGGTCAFIDAEHALDVQYASRLGVDVNNLLISQPDTGEQALEIADALVRSGSIDLIVID
SVAALVPKAEIEGDMGDSLPGLQARLMSQALRKLTGAIKRTNTTVIFINQIRMKIGVMFGSPETTTGGNALKFYASMRLD
IRRIGSIKKGDEVVGNETRVKVVKNKVSPPFREAIFDIMYGAGISREGEIIDMGVEADLVEKSGSWYSYNGDRIGQGKDN
VREFLKENPAIAQDIEKKIREKLGVKAGSAVVTDVLAEEEEVE

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=481582 ICW03_RS09760 WP_215347741.1 1887227..1888318(-) (recA) [Polynucleobacter sp. MWH-Aus1W21]
ATGGCCTTGGATGACAAAAGAAAATCAGCCTCTTCAGAATTTGAAGGAATGAGCGGAGACAAGCAAAAAGCACTAACAGC
AGCACTGGCGCAAATTGAGAAGCAATTTGGTAAAGGCTCAATCATGCGATTGGGTGATGCTGAAATTAGTCAAGATATTC
AGGTGGTATCAAGCGGTTCACTGGGGTTGGATATTGCTCTTGGAGTTGGTGGTTTGGCGCGCGGTCGTGTAATTGAAATT
TATGGCCCAGAATCTTCTGGCAAAACAACGCTCACATTGCACGCAATCGCAGAAATGCAAAAGCTCGGCGGTACTTGCGC
GTTTATCGATGCAGAGCATGCACTGGATGTTCAGTACGCATCACGCCTTGGTGTTGATGTAAATAATCTTTTAATCTCTC
AGCCAGATACTGGCGAACAAGCTTTAGAAATTGCAGATGCATTGGTGCGCTCTGGTTCTATTGACTTGATCGTGATCGAC
TCTGTTGCTGCCTTAGTCCCTAAGGCTGAGATCGAAGGCGATATGGGCGACTCTTTGCCTGGCTTGCAAGCTCGTTTGAT
GAGTCAGGCCTTGCGTAAGTTGACCGGCGCAATCAAGCGCACTAACACTACCGTGATCTTTATTAATCAGATTCGTATGA
AAATTGGTGTGATGTTTGGTTCACCAGAGACAACCACTGGCGGCAATGCTCTGAAGTTCTATGCATCTATGCGTTTAGAC
ATTCGCCGTATCGGTAGCATCAAAAAAGGTGATGAGGTTGTTGGTAACGAAACTCGCGTTAAGGTTGTGAAGAACAAAGT
TTCCCCTCCATTCCGTGAAGCCATTTTTGACATCATGTACGGCGCTGGTATTTCTAGAGAAGGCGAAATTATTGATATGG
GTGTCGAAGCAGACCTCGTTGAAAAGTCAGGCTCTTGGTATAGCTACAACGGCGACCGCATTGGTCAGGGTAAAGATAAT
GTGCGTGAGTTCTTAAAAGAGAATCCAGCTATTGCTCAAGATATCGAGAAAAAGATTCGTGAGAAGCTTGGTGTCAAGGC
TGGTTCAGCAGTAGTGACTGATGTACTTGCTGAGGAAGAAGAAGTCGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(23-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

80.78

98.898

0.799
  recA Neisseria gonorrhoeae MS11

73.333

90.909

0.667
  recA Neisseria gonorrhoeae MS11

73.333

90.909

0.667
  recA Neisseria gonorrhoeae strain FA1090

73.333

90.909

0.667
  recA Acinetobacter baylyi ADP1

69.767

94.766

0.661
  recA Acinetobacter baumannii D1279779

69.767

94.766

0.661
  recA Pseudomonas stutzeri DSM 10701

69.912

93.388

0.653
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.948

90.083

0.639
  recA Vibrio cholerae strain A1552

70.948

90.083

0.639
  recA Glaesserella parasuis strain SC1401

69.184

91.185

0.631
  recA Bacillus subtilis subsp. subtilis str. 168

67.791

89.807

0.609
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.327

94.215

0.606
  recA Helicobacter pylori 26695

67.178

89.807

0.603
  recA Helicobacter pylori strain NCTC11637

66.871

89.807

0.601
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.257

91.185

0.595
  recA Streptococcus pneumoniae R6

60.417

92.562

0.559
  recA Streptococcus pneumoniae Rx1

60.417

92.562

0.559
  recA Streptococcus pneumoniae D39

60.417

92.562

0.559
  recA Streptococcus pneumoniae TIGR4

60.417

92.562

0.559
  recA Latilactobacillus sakei subsp. sakei 23K

61.963

89.807

0.556
  recA Streptococcus mutans UA159

58.261

95.041

0.554
  recA Streptococcus mitis NCTC 12261

59.226

92.562

0.548
  recA Streptococcus mitis SK321

59.697

90.909

0.543
  recA Lactococcus lactis subsp. cremoris KW2

59.394

90.909

0.54
  recA Streptococcus pyogenes NZ131

59.271

90.634

0.537
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.436

88.43

0.534