Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ICV36_RS08950 Genome accession   NZ_CP061285
Coordinates   1727384..1728472 (-) Length   362 a.a.
NCBI ID   WP_215400347.1    Uniprot ID   -
Organism   Polynucleobacter sp. MWH-UH35A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1726845..1743448 1727384..1728472 within 0


Gene organization within MGE regions


Location: 1726845..1743448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICV36_RS08945 (ICV36_08945) recX 1726845..1727366 (-) 522 WP_215400346.1 recombination regulator RecX -
  ICV36_RS08950 (ICV36_08950) recA 1727384..1728472 (-) 1089 WP_215400347.1 recombinase RecA Machinery gene
  ICV36_RS08955 (ICV36_08955) - 1728580..1729122 (-) 543 WP_215400348.1 DUF2878 domain-containing protein -
  ICV36_RS08965 (ICV36_08965) - 1729419..1729586 (-) 168 WP_215400349.1 hypothetical protein -
  ICV36_RS08970 (ICV36_08970) - 1729609..1730202 (+) 594 WP_215400350.1 hypothetical protein -
  ICV36_RS08975 (ICV36_08975) - 1730183..1730332 (-) 150 WP_215400351.1 hypothetical protein -
  ICV36_RS08980 (ICV36_08980) - 1730374..1731399 (-) 1026 WP_215400352.1 tyrosine-type recombinase/integrase -
  ICV36_RS08985 (ICV36_08985) - 1731470..1731910 (-) 441 WP_215400353.1 DUF6641 family protein -
  ICV36_RS08990 (ICV36_08990) - 1732643..1733662 (+) 1020 WP_215400354.1 hypothetical protein -
  ICV36_RS08995 (ICV36_08995) - 1733659..1734741 (-) 1083 WP_251374998.1 DNA cytosine methyltransferase -
  ICV36_RS09000 (ICV36_09000) - 1735133..1735717 (+) 585 WP_215401622.1 site-specific integrase -
  ICV36_RS09005 (ICV36_09005) - 1735770..1736468 (-) 699 WP_215400355.1 AAA family ATPase -
  ICV36_RS09010 (ICV36_09010) - 1736534..1737322 (-) 789 WP_215400356.1 hypothetical protein -
  ICV36_RS09015 (ICV36_09015) - 1737461..1738201 (+) 741 WP_215400357.1 hypothetical protein -
  ICV36_RS09020 (ICV36_09020) - 1738278..1738736 (+) 459 WP_215400358.1 hypothetical protein -
  ICV36_RS09025 (ICV36_09025) - 1738765..1739973 (-) 1209 WP_215400359.1 tyrosine-type recombinase/integrase -
  ICV36_RS09030 (ICV36_09030) - 1740282..1740716 (-) 435 WP_215400360.1 hypothetical protein -
  ICV36_RS09035 (ICV36_09035) - 1740774..1741094 (+) 321 WP_215400361.1 DUF6150 family protein -
  ICV36_RS09040 (ICV36_09040) - 1741113..1741724 (+) 612 WP_215400362.1 MOSC domain-containing protein -
  ICV36_RS09045 (ICV36_09045) - 1741778..1743448 (-) 1671 WP_215400363.1 MFS transporter -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 38679.21 Da        Isoelectric Point: 4.9043

>NTDB_id=481572 ICV36_RS08950 WP_215400347.1 1727384..1728472(-) (recA) [Polynucleobacter sp. MWH-UH35A]
MALDDKRKSASSEFEGMSGDKQKALTAALAQIEKQFGKGSIMRLGDAEISEDIQVVSSGSLGLDIALGVGGLARGRVIEI
YGPESSGKTTLTLHAIAEMQKLGGTCAFIDAEHALDVQYAGKLGVDVNNLLISQPDTGEQALEIADALVRSGSIDLIVID
SVAALVPRAEIEGDMGDSLPGLQARLMSQALRKLTGAIKRTNTTVIFINQIRMKIGVMFGSPETTTGGNALKFYASMRLD
IRRIGSIKKGDEVVGNETRVKVVKNKVSPPFREAIFDIMYGAGISREGEIIDMGVEADLVEKSGSWYSYNGERIGQGKDN
VREFLKGNPAIAKDIEAKIREKLGVKSGSAVVTDVLSEEEVE

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=481572 ICV36_RS08950 WP_215400347.1 1727384..1728472(-) (recA) [Polynucleobacter sp. MWH-UH35A]
ATGGCCTTGGATGACAAAAGAAAATCAGCCTCTTCAGAATTTGAAGGGATGAGCGGAGACAAGCAAAAAGCATTAACAGC
AGCGCTGGCACAAATTGAAAAGCAATTTGGCAAAGGCTCAATCATGAGATTGGGCGATGCTGAAATTAGTGAAGATATTC
AGGTAGTTTCTAGTGGTTCACTTGGATTAGATATAGCTCTTGGGGTTGGTGGTCTGGCACGCGGCCGTGTGATTGAAATC
TACGGCCCAGAATCTTCTGGCAAAACAACACTCACATTGCACGCTATTGCAGAAATGCAAAAGCTTGGTGGGACTTGCGC
ATTTATTGACGCAGAACATGCCTTAGATGTGCAATACGCCGGAAAGCTGGGGGTCGATGTAAATAATTTGCTGATCTCTC
AGCCTGATACCGGTGAGCAAGCTCTAGAAATTGCAGATGCTTTGGTACGCTCAGGCTCGATTGATTTGATCGTAATCGAT
TCTGTTGCCGCTTTGGTTCCAAGAGCTGAGATTGAAGGCGATATGGGCGATTCATTGCCGGGCCTACAAGCGCGTTTGAT
GAGCCAAGCTTTACGTAAGTTGACTGGTGCTATCAAGCGCACTAATACTACTGTGATCTTCATTAACCAAATTCGTATGA
AGATTGGCGTAATGTTTGGCTCTCCAGAAACCACTACTGGTGGTAATGCGCTGAAGTTCTATGCCTCTATGCGTTTAGAC
ATCCGTCGCATCGGTAGCATCAAAAAGGGCGATGAGGTTGTTGGTAATGAAACCCGTGTGAAGGTTGTGAAAAACAAGGT
CTCTCCTCCGTTCCGCGAAGCGATTTTTGACATCATGTACGGCGCTGGTATTTCCAGGGAGGGCGAAATTATTGATATGG
GTGTCGAAGCTGATCTCGTTGAGAAGTCAGGCTCTTGGTATAGCTACAACGGTGAGCGTATTGGTCAGGGCAAAGACAAT
GTGCGTGAGTTTTTAAAAGGGAATCCAGCCATTGCTAAAGATATTGAAGCAAAGATTCGTGAGAAATTGGGCGTTAAATC
TGGTTCAGCAGTGGTGACTGATGTGCTGAGCGAGGAAGAAGTCGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(23-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

80.952

98.619

0.798
  recA Neisseria gonorrhoeae MS11

73.636

91.16

0.671
  recA Neisseria gonorrhoeae MS11

73.636

91.16

0.671
  recA Neisseria gonorrhoeae strain FA1090

73.636

91.16

0.671
  recA Acinetobacter baumannii D1279779

69.186

95.028

0.657
  recA Acinetobacter baylyi ADP1

69.186

95.028

0.657
  recA Pseudomonas stutzeri DSM 10701

69.617

93.646

0.652
  recA Glaesserella parasuis strain SC1401

67.246

95.304

0.641
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.336

90.331

0.635
  recA Vibrio cholerae strain A1552

70.336

90.331

0.635
  recA Bacillus subtilis subsp. subtilis str. 168

66.867

91.713

0.613
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.62

94.475

0.61
  recA Helicobacter pylori 26695

66.564

90.055

0.599
  recA Helicobacter pylori strain NCTC11637

66.258

90.055

0.597
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.35

91.436

0.588
  recA Latilactobacillus sakei subsp. sakei 23K

62.577

90.055

0.564
  recA Streptococcus mutans UA159

58.551

95.304

0.558
  recA Streptococcus pneumoniae Rx1

60.119

92.818

0.558
  recA Streptococcus pneumoniae D39

60.119

92.818

0.558
  recA Streptococcus pneumoniae R6

60.119

92.818

0.558
  recA Streptococcus pneumoniae TIGR4

60.119

92.818

0.558
  recA Streptococcus mitis NCTC 12261

59.524

92.818

0.552
  recA Streptococcus mitis SK321

59.76

91.989

0.55
  recA Lactococcus lactis subsp. cremoris KW2

58.333

92.818

0.541
  recA Streptococcus pyogenes NZ131

59.574

90.884

0.541
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.436

88.674

0.536