Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | D39N_RS08720 | Genome accession | NZ_CP061208 |
| Coordinates | 1733025..1734191 (-) | Length | 388 a.a. |
| NCBI ID | WP_001085462.1 | Uniprot ID | A0A0B7KZM2 |
| Organism | Streptococcus pneumoniae strain D39_P0 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 1726929..1749336 | 1733025..1734191 | within | 0 |
Gene organization within MGE regions
Location: 1726929..1749336
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D39N_RS08680 (D39N_01742) | - | 1726929..1727126 (-) | 198 | WP_000890144.1 | hypothetical protein | - |
| D39N_RS08685 (D39N_01743) | - | 1727130..1727924 (-) | 795 | WP_001101210.1 | hypothetical protein | - |
| D39N_RS08690 (D39N_01744) | - | 1728332..1728757 (-) | 426 | WP_000204065.1 | hypothetical protein | - |
| D39N_RS08695 (D39N_01745) | - | 1728886..1729245 (-) | 360 | WP_000749822.1 | hypothetical protein | - |
| D39N_RS08700 (D39N_01746) | - | 1729291..1729497 (-) | 207 | WP_000366091.1 | hypothetical protein | - |
| D39N_RS08705 | - | 1729484..1729657 (-) | 174 | WP_000289349.1 | helix-turn-helix transcriptional regulator | - |
| D39N_RS08710 (D39N_01747) | lytA | 1730016..1730972 (-) | 957 | WP_000405235.1 | N-acetylmuramoyl-L-alanine amidase LytA | - |
| D39N_RS08715 (D39N_01748) | - | 1731348..1732718 (-) | 1371 | WP_001036271.1 | MATE family efflux transporter | - |
| D39N_RS08720 (D39N_01749) | recA | 1733025..1734191 (-) | 1167 | WP_001085462.1 | recombinase RecA | Machinery gene |
| D39N_RS08725 (D39N_01750) | cinA | 1734246..1735502 (-) | 1257 | WP_000642700.1 | competence/damage-inducible protein A | Machinery gene |
| D39N_RS08730 (D39N_01751) | - | 1735587..1736603 (-) | 1017 | WP_000239282.1 | LCP family protein | - |
| D39N_RS08735 (D39N_01752) | - | 1736611..1737129 (-) | 519 | WP_000455537.1 | GNAT family N-acetyltransferase | - |
| D39N_RS08740 (D39N_01753) | tsaE | 1737119..1737562 (-) | 444 | WP_000288232.1 | tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE | - |
| D39N_RS08745 (D39N_01754) | comM | 1737648..1738268 (-) | 621 | WP_000839908.1 | hypothetical protein | Regulator |
| D39N_RS08750 (D39N_01755) | - | 1738651..1739514 (-) | 864 | WP_001093641.1 | helix-turn-helix transcriptional regulator | - |
| D39N_RS10855 (D39N_01756) | - | 1739706..1739876 (+) | 171 | WP_001227862.1 | PhrA family quorum-sensing system peptide | - |
| D39N_RS08755 (D39N_01757) | pneA1 | 1739979..1740203 (+) | 225 | WP_000181087.1 | two-peptide bacteriocin subunit PneA1 | - |
| D39N_RS08760 (D39N_01758) | pneA2 | 1740210..1740398 (+) | 189 | WP_000786759.1 | two-peptide bacteriocin subunit PneA2 | - |
| D39N_RS08765 (D39N_01759) | lanM | 1740514..1743504 (+) | 2991 | WP_000875575.1 | type 2 lanthipeptide synthetase LanM | - |
| D39N_RS08770 (D39N_01760) | - | 1743854..1744558 (+) | 705 | WP_001033170.1 | flavodoxin family protein | - |
| D39N_RS08775 (D39N_01761) | - | 1744539..1745468 (+) | 930 | WP_000912954.1 | M50 family metallopeptidase | - |
| D39N_RS08780 (D39N_01762) | - | 1745465..1747573 (+) | 2109 | WP_000701298.1 | peptidase domain-containing ABC transporter | - |
| D39N_RS08785 (D39N_01763) | - | 1747597..1749336 (+) | 1740 | WP_000699969.1 | S8 family serine peptidase | - |
Sequence
Protein
Download Length: 388 a.a. Molecular weight: 41949.78 Da Isoelectric Point: 4.8403
>NTDB_id=481419 D39N_RS08720 WP_001085462.1 1733025..1734191(-) (recA) [Streptococcus pneumoniae strain D39_P0]
MAKKPKKLEEISKKFGAEREKALNDALKLIEKDFGKGSIMRLGERAEQKVQVMSSGSLALDIALGSGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRG
NTQIKGTGDQKETNVGKETKIKVVKNKVAPPFKEAVVEIMYGEGISKTGELLKIASDLDIIKKAGAWYSYKDEKIGQGSE
NAKKYLAEHPEIFDEIDKQVRSKFGLIDGEEVSEQDTENKKDEPKKEEAVNEEVPLDLGDELEIEIEE
MAKKPKKLEEISKKFGAEREKALNDALKLIEKDFGKGSIMRLGERAEQKVQVMSSGSLALDIALGSGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRG
NTQIKGTGDQKETNVGKETKIKVVKNKVAPPFKEAVVEIMYGEGISKTGELLKIASDLDIIKKAGAWYSYKDEKIGQGSE
NAKKYLAEHPEIFDEIDKQVRSKFGLIDGEEVSEQDTENKKDEPKKEEAVNEEVPLDLGDELEIEIEE
Nucleotide
Download Length: 1167 bp
>NTDB_id=481419 D39N_RS08720 WP_001085462.1 1733025..1734191(-) (recA) [Streptococcus pneumoniae strain D39_P0]
ATGGCGAAAAAACCAAAAAAATTAGAAGAAATTTCAAAAAAATTTGGGGCAGAACGTGAAAAGGCCTTGAATGACGCTCT
TAAATTGATTGAGAAAGACTTTGGTAAAGGATCAATCATGCGTTTGGGTGAACGTGCGGAGCAAAAGGTGCAAGTGATGA
GCTCAGGTTCTTTAGCTCTTGACATTGCCCTTGGCTCAGGTGGTTATCCTAAGGGACGTATCATCGAAATCTATGGCCCA
GAGTCATCTGGTAAGACAACGGTTGCCCTTCATGCAGTTGCACAAGCGCAAAAAGAAGGTGGGATTGCTGCCTTTATCGA
TGCGGAACATGCCCTTGATCCAGCTTATGCTGCGGCCCTTGGTGTCAATATTGACGAATTGCTCTTGTCTCAACCAGACT
CAGGAGAGCAAGGTCTTGAGATTGCGGGAAAATTGATTGACTCAGGTGCAGTTGATCTTGTCGTAGTCGACTCAGTTGCT
GCCCTTGTTCCTCGTGCGGAAATTGATGGAGATATCGGAGATAGCCATGTTGGTTTGCAGGCTCGTATGATGAGCCAGGC
CATGCGTAAACTTGGCGCCTCTATCAATAAAACCAAAACAATTGCCATTTTTATCAACCAATTGCGTGAAAAAGTTGGAG
TGATGTTTGGAAATCCAGAAACAACACCGGGCGGACGTGCTTTGAAATTCTATGCTTCAGTCCGCTTGGATGTTCGTGGT
AATACACAAATTAAGGGAACTGGTGATCAAAAAGAAACCAATGTCGGTAAAGAAACTAAGATTAAGGTTGTAAAAAATAA
GGTAGCTCCACCGTTTAAGGAAGCCGTAGTTGAAATTATGTACGGAGAAGGAATTTCTAAGACTGGTGAGCTTTTGAAGA
TTGCAAGCGATTTGGATATTATCAAAAAAGCAGGGGCTTGGTATTCTTACAAAGATGAAAAAATTGGGCAAGGTTCTGAG
AATGCTAAGAAATACTTGGCAGAGCACCCAGAAATCTTTGATGAAATTGATAAGCAAGTCCGTTCTAAATTTGGCTTGAT
TGATGGAGAAGAAGTTTCAGAACAAGATACTGAAAACAAAAAAGATGAGCCAAAGAAAGAAGAAGCAGTGAATGAAGAAG
TTCCGCTTGACTTAGGCGATGAACTTGAAATCGAAATTGAAGAATAA
ATGGCGAAAAAACCAAAAAAATTAGAAGAAATTTCAAAAAAATTTGGGGCAGAACGTGAAAAGGCCTTGAATGACGCTCT
TAAATTGATTGAGAAAGACTTTGGTAAAGGATCAATCATGCGTTTGGGTGAACGTGCGGAGCAAAAGGTGCAAGTGATGA
GCTCAGGTTCTTTAGCTCTTGACATTGCCCTTGGCTCAGGTGGTTATCCTAAGGGACGTATCATCGAAATCTATGGCCCA
GAGTCATCTGGTAAGACAACGGTTGCCCTTCATGCAGTTGCACAAGCGCAAAAAGAAGGTGGGATTGCTGCCTTTATCGA
TGCGGAACATGCCCTTGATCCAGCTTATGCTGCGGCCCTTGGTGTCAATATTGACGAATTGCTCTTGTCTCAACCAGACT
CAGGAGAGCAAGGTCTTGAGATTGCGGGAAAATTGATTGACTCAGGTGCAGTTGATCTTGTCGTAGTCGACTCAGTTGCT
GCCCTTGTTCCTCGTGCGGAAATTGATGGAGATATCGGAGATAGCCATGTTGGTTTGCAGGCTCGTATGATGAGCCAGGC
CATGCGTAAACTTGGCGCCTCTATCAATAAAACCAAAACAATTGCCATTTTTATCAACCAATTGCGTGAAAAAGTTGGAG
TGATGTTTGGAAATCCAGAAACAACACCGGGCGGACGTGCTTTGAAATTCTATGCTTCAGTCCGCTTGGATGTTCGTGGT
AATACACAAATTAAGGGAACTGGTGATCAAAAAGAAACCAATGTCGGTAAAGAAACTAAGATTAAGGTTGTAAAAAATAA
GGTAGCTCCACCGTTTAAGGAAGCCGTAGTTGAAATTATGTACGGAGAAGGAATTTCTAAGACTGGTGAGCTTTTGAAGA
TTGCAAGCGATTTGGATATTATCAAAAAAGCAGGGGCTTGGTATTCTTACAAAGATGAAAAAATTGGGCAAGGTTCTGAG
AATGCTAAGAAATACTTGGCAGAGCACCCAGAAATCTTTGATGAAATTGATAAGCAAGTCCGTTCTAAATTTGGCTTGAT
TGATGGAGAAGAAGTTTCAGAACAAGATACTGAAAACAAAAAAGATGAGCCAAAGAAAGAAGAAGCAGTGAATGAAGAAG
TTCCGCTTGACTTAGGCGATGAACTTGAAATCGAAATTGAAGAATAA
Similar proteins
Only experimentally validated proteins are listed.