Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   H9N25_RS00855 Genome accession   NZ_CP061171
Coordinates   193754..194767 (-) Length   337 a.a.
NCBI ID   WP_113950465.1    Uniprot ID   A0AAU7K6C9
Organism   Pedobacter riviphilus strain SW-16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 188754..199767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9N25_RS00840 (H9N25_00840) tsaD 189761..190762 (+) 1002 WP_190327622.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  H9N25_RS00845 (H9N25_00845) - 191048..191245 (+) 198 WP_167292877.1 hypothetical protein -
  H9N25_RS00850 (H9N25_00850) - 191324..193678 (+) 2355 WP_190327623.1 TonB-dependent receptor -
  H9N25_RS00855 (H9N25_00855) recA 193754..194767 (-) 1014 WP_113950465.1 recombinase RecA Machinery gene
  H9N25_RS00860 (H9N25_00860) nth 194903..195568 (-) 666 WP_029280284.1 endonuclease III -
  H9N25_RS00865 (H9N25_00865) - 197517..197993 (+) 477 WP_190327624.1 DUF3347 domain-containing protein -

Sequence

Protein


Download         Length: 337 a.a.        Molecular weight: 36268.72 Da        Isoelectric Point: 5.5259

>NTDB_id=481121 H9N25_RS00855 WP_113950465.1 193754..194767(-) (recA) [Pedobacter riviphilus strain SW-16]
MSTANPDKLKALQLTLDKLEKSYGKGTIMKLGDTAIEPIDFISTGSISLDIALGIGGIPKGRVIEIYGPESSGKTTLATH
IIAEAQKKGGIAAFIDAEHAFDQFYAKKLGVDTDNLLISQPDNGEQALEIADNLIRSGAIDVIVIDSVAALVPKSEIEGE
MGDSKMGLHARLMSQALRKLTGTISKTGCCCIFINQLRDKIGVMFGNPETTTGGNALKFYASVRLDIRRISQIKDSDEVS
GNRVKVKIVKNKVAPPFRIAEFDVMFGEGISKNGEIIDLGVDFGIIKKAGSWFSYGDTKLGQGRDAVKQLLSDNPELAEE
LEIKIKAEVTGEHLAEK

Nucleotide


Download         Length: 1014 bp        

>NTDB_id=481121 H9N25_RS00855 WP_113950465.1 193754..194767(-) (recA) [Pedobacter riviphilus strain SW-16]
ATGAGCACTGCAAATCCAGATAAATTAAAAGCCTTACAACTTACTTTAGATAAACTAGAGAAATCTTACGGTAAAGGTAC
CATCATGAAACTTGGCGATACTGCCATTGAACCGATAGATTTTATTTCTACCGGATCAATCAGTTTAGATATTGCTTTAG
GTATTGGCGGTATTCCAAAAGGCCGTGTTATTGAAATTTATGGTCCAGAGTCTTCTGGTAAAACCACTTTAGCTACACAT
ATTATTGCCGAAGCACAGAAAAAAGGCGGTATTGCTGCTTTTATAGATGCAGAACATGCTTTTGATCAGTTTTATGCTAA
GAAACTAGGTGTAGATACAGATAACCTTTTAATCTCTCAGCCAGATAATGGTGAGCAGGCCTTAGAAATTGCCGATAACT
TAATCCGTTCTGGTGCTATTGATGTAATTGTAATCGACTCTGTTGCGGCTTTGGTTCCTAAAAGTGAAATTGAGGGCGAA
ATGGGCGACAGTAAAATGGGTTTACATGCCCGTTTAATGAGTCAGGCGCTTCGTAAATTAACCGGAACGATTTCTAAAAC
CGGATGTTGCTGTATTTTCATTAACCAGTTACGTGATAAAATTGGTGTAATGTTCGGTAACCCTGAAACTACAACCGGTG
GTAATGCTTTGAAATTTTATGCATCGGTACGTTTAGATATCCGTCGTATTTCACAGATCAAAGATTCTGACGAAGTTTCT
GGTAACCGTGTGAAAGTAAAAATTGTTAAAAATAAAGTGGCCCCTCCTTTCCGTATCGCAGAATTTGATGTGATGTTTGG
TGAAGGTATTTCTAAAAACGGTGAGATTATCGACCTAGGTGTTGATTTTGGTATCATCAAAAAAGCAGGATCATGGTTTT
CTTACGGAGATACCAAACTTGGCCAAGGTAGAGATGCCGTAAAACAATTGTTAAGCGACAATCCTGAACTCGCAGAAGAG
CTGGAAATTAAAATCAAAGCCGAAGTTACAGGCGAACACCTGGCAGAAAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(10-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

70.958

99.11

0.703
  recA Ralstonia pseudosolanacearum GMI1000

67.089

93.769

0.629
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.044

95.252

0.629
  recA Helicobacter pylori 26695

64.417

96.736

0.623
  recA Helicobacter pylori strain NCTC11637

64.417

96.736

0.623
  recA Glaesserella parasuis strain SC1401

65.204

94.659

0.617
  recA Acinetobacter baumannii D1279779

63.777

95.846

0.611
  recA Neisseria gonorrhoeae MS11

63.665

95.549

0.608
  recA Neisseria gonorrhoeae MS11

63.665

95.549

0.608
  recA Neisseria gonorrhoeae strain FA1090

63.665

95.549

0.608
  recA Acinetobacter baylyi ADP1

63.467

95.846

0.608
  recA Pseudomonas stutzeri DSM 10701

62.539

95.846

0.599
  recA Streptococcus mitis SK321

59.05

100

0.591
  recA Streptococcus mitis NCTC 12261

59.05

100

0.591
  recA Bacillus subtilis subsp. subtilis str. 168

62.187

94.955

0.59
  recA Vibrio cholerae strain A1552

61.875

94.955

0.588
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.875

94.955

0.588
  recA Streptococcus pneumoniae TIGR4

58.284

100

0.585
  recA Streptococcus pneumoniae D39

58.284

100

0.585
  recA Streptococcus pneumoniae R6

58.284

100

0.585
  recA Streptococcus pneumoniae Rx1

58.284

100

0.585
  recA Streptococcus pyogenes NZ131

59.259

96.142

0.57
  recA Lactococcus lactis subsp. cremoris KW2

59.317

95.549

0.567
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.642

96.142

0.564
  recA Streptococcus mutans UA159

57.669

96.736

0.558
  recA Latilactobacillus sakei subsp. sakei 23K

57.716

96.142

0.555