Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   IAI47_RS04300 Genome accession   NZ_CP061083
Coordinates   905642..906712 (+) Length   356 a.a.
NCBI ID   WP_003849064.1    Uniprot ID   A0A2S1CTT1
Organism   Pantoea sp. MT58     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 900642..911712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAI47_RS04270 (IAI47_04270) narI 900756..901433 (+) 678 WP_008927097.1 respiratory nitrate reductase subunit gamma -
  IAI47_RS04275 (IAI47_04275) mltB 901584..902666 (+) 1083 WP_003849072.1 lytic murein transglycosylase B -
  IAI47_RS04280 (IAI47_04280) - 902747..903082 (+) 336 WP_003849071.1 zinc ribbon domain-containing protein YjdM -
  IAI47_RS04285 (IAI47_04285) - 903116..904003 (-) 888 WP_008927096.1 dihydrodipicolinate synthase family protein -
  IAI47_RS04290 (IAI47_04290) tam 904170..904946 (+) 777 WP_008927095.1 trans-aconitate 2-methyltransferase -
  IAI47_RS04295 (IAI47_04295) pncC 905052..905546 (+) 495 WP_008927094.1 nicotinamide-nucleotide amidase -
  IAI47_RS04300 (IAI47_04300) recA 905642..906712 (+) 1071 WP_003849064.1 recombinase RecA Machinery gene
  IAI47_RS04305 (IAI47_04305) - 906837..907355 (+) 519 WP_008927093.1 regulatory protein RecX -
  IAI47_RS04310 (IAI47_04310) alaS 907489..910116 (+) 2628 WP_008927092.1 alanine--tRNA ligase -
  IAI47_RS04315 (IAI47_04315) csrA 910366..910551 (+) 186 WP_008927091.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38009.53 Da        Isoelectric Point: 5.1841

>NTDB_id=480500 IAI47_RS04300 WP_003849064.1 905642..906712(+) (recA) [Pantoea sp. MT58]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IASAQRKGKTCAFIDAEHALDPVYAKKLGVDIENLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDNVVG
SETRVKVVKNKIAAPFKQAEFQIMYGEGINTFGELVDLGVKHKLIEKAGAWYSYNGDKIGQGKSNAGNFLKENAAVANEI
DLKLREMLLNGADEKLAAADKAAEKENAASEANEDF

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=480500 IAI47_RS04300 WP_003849064.1 905642..906712(+) (recA) [Pantoea sp. MT58]
ATGGCGATTGATGAAAACAAACAGAAGGCTTTAGCTGCCGCGCTTGGCCAGATTGAGAAACAATTTGGTAAAGGCTCCAT
CATGCGCTTGGGTGAAGACCGCTCAATGGATGTGGAAACCATCTCTACTGGTTCGCTGTCGCTGGATATCGCGTTAGGCG
CAGGCGGTCTGCCAATGGGTCGTATCGTTGAGATCTACGGACCGGAGTCTTCTGGTAAAACCACGCTGACCCTGCAGGTT
ATCGCGTCTGCGCAGCGTAAAGGCAAAACCTGTGCCTTTATCGATGCTGAGCATGCGCTCGATCCGGTTTACGCCAAGAA
ACTGGGCGTAGACATTGAGAACCTGCTCTGTTCTCAGCCCGATACGGGTGAGCAGGCGCTGGAAATCTGTGATGCGCTGG
CGCGCTCTGGTGCGGTTGATGTCATCATCGTCGACTCCGTTGCCGCTCTGACGCCTAAAGCAGAAATTGAAGGTGAAATC
GGTGACTCTCACATGGGCCTCGCGGCACGTATGATGAGCCAGGCCATGCGTAAGCTGGCCGGTAACCTGAAGCAGTCTAA
TACCCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGTGTGATGTTTGGTAACCCGGAAACCACCACCGGTGGTA
ACGCGCTGAAGTTCTACGCTTCTGTCCGCCTTGATATCCGTCGTATCGGCGCAATCAAAGAGGGCGATAACGTGGTCGGC
AGTGAGACCCGCGTTAAAGTGGTGAAAAACAAAATCGCCGCGCCATTCAAACAGGCTGAGTTCCAGATCATGTATGGCGA
AGGTATCAATACCTTTGGTGAGCTGGTCGACCTGGGCGTGAAGCACAAGCTGATTGAAAAAGCGGGTGCGTGGTACAGCT
ATAACGGCGACAAGATTGGTCAGGGCAAATCGAATGCCGGCAACTTCCTGAAAGAGAATGCTGCTGTGGCAAACGAAATT
GATCTGAAGTTGCGTGAGATGCTGCTCAACGGCGCGGATGAAAAACTCGCAGCAGCTGACAAGGCTGCCGAGAAAGAAAA
CGCAGCAAGTGAAGCGAACGAAGACTTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S1CTT1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

80.508

99.438

0.801
  recA Vibrio cholerae strain A1552

80.508

99.438

0.801
  recA Acinetobacter baylyi ADP1

70.145

96.91

0.68
  recA Acinetobacter baumannii D1279779

72.455

93.82

0.68
  recA Pseudomonas stutzeri DSM 10701

73.7

91.854

0.677
  recA Glaesserella parasuis strain SC1401

67.236

98.596

0.663
  recA Neisseria gonorrhoeae strain FA1090

68.072

93.258

0.635
  recA Neisseria gonorrhoeae MS11

68.072

93.258

0.635
  recA Neisseria gonorrhoeae MS11

68.072

93.258

0.635
  recA Ralstonia pseudosolanacearum GMI1000

70.74

87.36

0.618
  recA Helicobacter pylori strain NCTC11637

62.315

94.663

0.59
  recA Helicobacter pylori 26695

62.018

94.663

0.587
  recA Streptococcus mitis SK321

58.146

100

0.581
  recA Streptococcus mitis NCTC 12261

58.146

100

0.581
  recA Bacillus subtilis subsp. subtilis str. 168

63.24

90.169

0.57
  recA Lactococcus lactis subsp. cremoris KW2

62.539

90.73

0.567
  recA Latilactobacillus sakei subsp. sakei 23K

61.538

91.292

0.562
  recA Streptococcus pyogenes NZ131

61.538

91.292

0.562
  recA Streptococcus mutans UA159

61.538

91.292

0.562
  recA Streptococcus pneumoniae Rx1

61.61

90.73

0.559
  recA Streptococcus pneumoniae D39

61.61

90.73

0.559
  recA Streptococcus pneumoniae R6

61.61

90.73

0.559
  recA Streptococcus pneumoniae TIGR4

61.61

90.73

0.559
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.382

89.607

0.559
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.639

93.258

0.556
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.937

89.045

0.534