Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   IBC04_RS00410 Genome accession   NZ_CP061020
Coordinates   72218..73357 (+) Length   379 a.a.
NCBI ID   WP_011680606.1    Uniprot ID   A0A0N8G956
Organism   Streptococcus thermophilus strain 24740     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 67218..78357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBC04_RS00385 (IBC04_00390) mutL 67218..69161 (+) 1944 WP_011680601.1 DNA mismatch repair endonuclease MutL -
  IBC04_RS00390 (IBC04_00395) - 69291..69512 (+) 222 WP_011680602.1 hypothetical protein -
  IBC04_RS00395 (IBC04_00400) ruvA 69664..70254 (+) 591 WP_011680603.1 Holliday junction branch migration protein RuvA -
  IBC04_RS00400 (IBC04_00405) - 70261..70815 (+) 555 WP_014621014.1 DNA-3-methyladenine glycosylase I -
  IBC04_RS00405 (IBC04_00410) cinA 70911..72182 (+) 1272 WP_014621015.1 competence/damage-inducible protein A Machinery gene
  IBC04_RS00410 (IBC04_00415) recA 72218..73357 (+) 1140 WP_011680606.1 recombinase RecA Machinery gene
  IBC04_RS00415 (IBC04_00420) spx 73534..73932 (+) 399 WP_002949058.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 379 a.a.        Molecular weight: 40911.49 Da        Isoelectric Point: 4.8394

>NTDB_id=479507 IBC04_RS00410 WP_011680606.1 72218..73357(+) (recA) [Streptococcus thermophilus strain 24740]
MAKKTKKTEEITKKFGDERRKALDDALKNIEKDFGKGAVMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQTQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGIMFGNPETTPGGRALKFYASVRLDVRG
NTQIKGTGDKKDQNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISQTGELVKIASDIGIIQKAGAWFSYNGEKIGQGSE
NAKKYLADHPEIFAEIDHKVRVHYGLIELDEDDVVEDTQVEDTSDELILDLDSTIEIEE

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=479507 IBC04_RS00410 WP_011680606.1 72218..73357(+) (recA) [Streptococcus thermophilus strain 24740]
GTGGCTAAGAAAACAAAGAAAACAGAAGAAATCACAAAGAAGTTTGGTGATGAGCGTCGCAAAGCACTCGACGATGCATT
AAAAAACATTGAAAAAGATTTTGGTAAGGGTGCAGTTATGCGTCTTGGTGAGCGTGCAGAGCAAAAAGTTCAGGTTATGA
GCTCAGGCTCGCTAGCTTTGGATATTGCTCTTGGTGCGGGTGGTTACCCTAAAGGTCGTATTATTGAAATTTACGGACCA
GAATCATCAGGTAAAACAACTGTTGCCCTTCATGCAGTTGCTCAGACTCAAAAAGAAGGTGGCATCGCAGCTTTTATCGA
TGCCGAGCATGCTCTTGACCCTGCGTATGCAGCAGCTCTAGGTGTTAATATCGATGAGCTTCTTTTGTCGCAGCCTGATT
CTGGTGAGCAAGGTCTCGAAATTGCAGGTAAGCTGATTGACTCTGGTGCAGTGGATTTAGTTGTTGTTGACTCAGTTGCG
GCCTTGGTACCACGTGCAGAAATTGATGGAGATATTGGTGACAGTCATGTAGGACTTCAAGCGCGTATGATGAGTCAAGC
CATGCGTAAACTTTCTGCATCTATTAATAAAACAAAAACGATTGCTATCTTTATTAACCAGTTGCGTGAAAAAGTTGGTA
TCATGTTTGGTAACCCAGAGACTACCCCAGGTGGACGTGCTTTAAAATTCTATGCATCAGTACGTCTTGATGTACGTGGT
AATACACAAATTAAAGGAACCGGTGACAAAAAGGACCAAAATGTTGGTAAGGAAACCAAGATTAAGGTTGTTAAAAACAA
AGTTGCTCCACCATTTAAAGAAGCTTTTGTTGAAATTATGTATGGCGAAGGAATTTCACAAACCGGTGAACTTGTAAAAA
TTGCAAGTGATATAGGCATTATTCAGAAAGCCGGAGCTTGGTTCTCATATAATGGGGAGAAAATTGGTCAAGGATCTGAA
AATGCTAAAAAGTATTTAGCAGATCACCCTGAGATTTTTGCAGAAATCGATCATAAAGTACGCGTACACTACGGTCTGAT
TGAGCTAGATGAGGACGATGTTGTTGAAGATACACAAGTTGAAGACACGTCTGATGAACTCATTCTAGATCTTGATTCAA
CCATTGAAATCGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0N8G956

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mutans UA159

88.251

100

0.892
  recA Streptococcus pyogenes NZ131

89.182

100

0.892
  recA Streptococcus mitis SK321

86.352

100

0.868
  recA Streptococcus mitis NCTC 12261

86.352

100

0.868
  recA Streptococcus pneumoniae Rx1

84.935

100

0.863
  recA Streptococcus pneumoniae D39

84.935

100

0.863
  recA Streptococcus pneumoniae R6

84.935

100

0.863
  recA Streptococcus pneumoniae TIGR4

84.935

100

0.863
  recA Lactococcus lactis subsp. cremoris KW2

77.62

93.14

0.723
  recA Latilactobacillus sakei subsp. sakei 23K

66.575

95.515

0.636
  recA Bacillus subtilis subsp. subtilis str. 168

67.781

86.807

0.588
  recA Neisseria gonorrhoeae MS11

59.827

91.293

0.546
  recA Neisseria gonorrhoeae MS11

59.827

91.293

0.546
  recA Neisseria gonorrhoeae strain FA1090

59.827

91.293

0.546
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.177

89.446

0.538
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.539

85.224

0.533
  recA Glaesserella parasuis strain SC1401

59.412

89.71

0.533
  recA Acinetobacter baylyi ADP1

62.154

85.752

0.533
  recA Acinetobacter baumannii D1279779

62.154

85.752

0.533
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.231

85.752

0.525
  recA Vibrio cholerae strain A1552

61.231

85.752

0.525
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.891

89.974

0.512
  recA Pseudomonas stutzeri DSM 10701

58.462

85.752

0.501
  recA Ralstonia pseudosolanacearum GMI1000

57.576

87.071

0.501
  recA Helicobacter pylori strain NCTC11637

56.667

87.071

0.493
  recA Helicobacter pylori 26695

56.667

87.071

0.493