Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   IAG39_RS22280 Genome accession   NZ_CP061008
Coordinates   4803503..4804567 (-) Length   354 a.a.
NCBI ID   WP_059379220.1    Uniprot ID   -
Organism   Achromobacter xylosoxidans strain GD03     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4798503..4809567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAG39_RS22265 (IAG39_22265) - 4800898..4801815 (+) 918 WP_059379209.1 LysR family transcriptional regulator -
  IAG39_RS22270 (IAG39_22270) - 4801928..4802602 (+) 675 WP_223283423.1 hypothetical protein -
  IAG39_RS22275 (IAG39_22275) recX 4802681..4803367 (-) 687 WP_118933343.1 recombination regulator RecX -
  IAG39_RS22280 (IAG39_22280) recA 4803503..4804567 (-) 1065 WP_059379220.1 recombinase RecA Machinery gene
  IAG39_RS22285 (IAG39_22285) - 4804799..4805488 (+) 690 WP_013392535.1 response regulator transcription factor -
  IAG39_RS22290 (IAG39_22290) - 4805604..4806983 (+) 1380 WP_118933365.1 sensor histidine kinase -
  IAG39_RS22295 (IAG39_22295) - 4807178..4808839 (+) 1662 WP_059379225.1 MFS transporter -
  IAG39_RS22300 (IAG39_22300) - 4809257..4809466 (-) 210 WP_059379226.1 hypothetical protein -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38016.37 Da        Isoelectric Point: 5.1804

>NTDB_id=479444 IAG39_RS22280 WP_059379220.1 4803503..4804567(-) (recA) [Achromobacter xylosoxidans strain GD03]
MDDKTTKAAASEKAKALAAALSQIEKQFGKGSIMRYGDNDVSHDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGK
TTLTLQVVAEMQKLGGTCAFVDAEHALDVQYASKLGVNLADLLISQPDTGEQALEITDALVRSGSVDLIVIDSVAALVPK
AEIEGEMGDSLPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIK
KGDEVVGNETRVKVVKNKVAPPFKQAEFDIMYGAGISREGEIIDLGVAANVVDKSGAWYSYNGNRIGQGKDNVREYLKEH
KELAIEIENRVRENQGIVSRAAEFVPTAEDTSEE

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=479444 IAG39_RS22280 WP_059379220.1 4803503..4804567(-) (recA) [Achromobacter xylosoxidans strain GD03]
ATGGACGACAAAACCACCAAGGCCGCCGCATCGGAAAAGGCCAAGGCGCTTGCCGCCGCGCTTTCGCAGATCGAAAAGCA
GTTCGGCAAGGGCTCGATCATGCGCTACGGCGACAACGATGTTTCGCATGACATCCAGGTGGTTTCCACGGGCTCGCTCG
GTCTGGACATCGCGCTGGGCGTCGGCGGCCTGCCGCGAGGCCGCGTGGTTGAAATCTACGGTCCGGAATCCTCGGGCAAG
ACCACGCTGACGCTGCAAGTGGTCGCTGAAATGCAAAAGCTGGGCGGCACCTGCGCCTTCGTCGACGCCGAACACGCGCT
CGACGTGCAATACGCCTCCAAGCTGGGCGTGAACCTGGCCGACCTGCTGATCTCGCAGCCGGACACGGGCGAGCAGGCCC
TGGAAATCACCGATGCGCTGGTGCGCTCCGGTTCGGTCGACCTGATCGTCATCGACTCGGTGGCCGCGCTGGTGCCCAAG
GCCGAAATCGAAGGCGAAATGGGTGATTCCCTGCCCGGCCTGCAAGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCTCAC
CGCCACCATCAAGAAGACCAATTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAACC
CCGAAACCACCACCGGCGGCAACGCGCTCAAGTTCTACGCCTCCGTGCGCCTGGACATCCGCCGCATCGGTTCCATCAAG
AAGGGCGACGAAGTCGTCGGCAACGAAACCCGCGTCAAGGTCGTGAAGAACAAGGTCGCGCCGCCGTTCAAGCAGGCCGA
ATTCGACATCATGTACGGCGCCGGCATCTCGCGCGAAGGCGAAATCATCGACCTGGGCGTGGCCGCCAATGTGGTGGACA
AGTCCGGCGCCTGGTACAGCTACAACGGCAATCGCATCGGCCAGGGCAAGGACAATGTCCGCGAGTACCTGAAAGAACAC
AAGGAACTGGCCATCGAAATCGAGAACCGCGTTCGCGAGAACCAAGGCATCGTCAGCCGCGCGGCAGAATTCGTGCCGAC
CGCGGAAGATACCTCCGAAGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(15-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

81.87

99.718

0.816
  recA Pseudomonas stutzeri DSM 10701

72.141

96.328

0.695
  recA Neisseria gonorrhoeae MS11

72.561

92.655

0.672
  recA Neisseria gonorrhoeae MS11

72.561

92.655

0.672
  recA Neisseria gonorrhoeae strain FA1090

72.561

92.655

0.672
  recA Acinetobacter baylyi ADP1

69.298

96.61

0.669
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.52

90.678

0.667
  recA Vibrio cholerae strain A1552

73.52

90.678

0.667
  recA Glaesserella parasuis strain SC1401

68.222

96.893

0.661
  recA Acinetobacter baumannii D1279779

72.586

90.678

0.658
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.165

94.068

0.613
  recA Latilactobacillus sakei subsp. sakei 23K

63.158

96.61

0.61
  recA Helicobacter pylori 26695

61.494

98.305

0.605
  recA Helicobacter pylori strain NCTC11637

61.207

98.305

0.602
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.031

92.09

0.599
  recA Bacillus subtilis subsp. subtilis str. 168

64.526

92.373

0.596
  recA Streptococcus pneumoniae R6

59.706

96.045

0.573
  recA Streptococcus pneumoniae Rx1

59.706

96.045

0.573
  recA Streptococcus pneumoniae D39

59.706

96.045

0.573
  recA Streptococcus pneumoniae TIGR4

59.706

96.045

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.539

91.243

0.571
  recA Streptococcus mitis SK321

59.118

96.045

0.568
  recA Streptococcus mitis NCTC 12261

59.118

96.045

0.568
  recA Lactococcus lactis subsp. cremoris KW2

59.118

96.045

0.568
  recA Streptococcus mutans UA159

56.461

100

0.568
  recA Streptococcus pyogenes NZ131

59.701

94.633

0.565