Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   IA041_RS13160 Genome accession   NZ_CP060861
Coordinates   2704125..2705174 (-) Length   349 a.a.
NCBI ID   WP_187767793.1    Uniprot ID   -
Organism   Enterococcus faecium strain AML0157     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2699125..2710174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IA041_RS13150 proC 2701273..2702079 (+) 807 WP_002303638.1 pyrroline-5-carboxylate reductase -
  IA041_RS13155 rny 2702158..2703714 (-) 1557 WP_002287336.1 ribonuclease Y -
  IA041_RS13160 recA 2704125..2705174 (-) 1050 WP_187767793.1 recombinase RecA Machinery gene
  IA041_RS13165 cinA 2705283..2706524 (-) 1242 WP_002296026.1 competence/damage-inducible protein A Machinery gene
  IA041_RS13170 pgsA 2706764..2707342 (-) 579 WP_002296025.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  IA041_RS13175 - 2707551..2708474 (-) 924 WP_002287423.1 RodZ domain-containing protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37555.99 Da        Isoelectric Point: 4.8330

>NTDB_id=478838 IA041_RS13160 WP_187767793.1 2704125..2705174(-) (recA) [Enterococcus faecium strain AML0157]
MADDRKAALDAALKKIEKSYGKGSIMKLVEKIDQQISTIPSGSLALDVALGVGGYPRGRIIEVYGPESSGKTTVALHAIA
EVQKNGGTAAFIDAEHALDPQYAQKLGVNIDELLLSQPDTGEQGLEIADALVSSGAVDIVVVDSVAALVPRAEIDGEMGD
SHVGLQARLMSQALRKLSGSINKTKTIAIFINQIREKVGVMFGNPEITPGGRALKFYATIRLEVRRAEQLKQGTDIVGNR
TKIKVVKNKVAPPFKIAEVDVMYGLGISQEGELLDMAVEKDIVDKSGAWYSYKEDRIGQGRENAKIYMANHPEMMAEVSA
LVRAAYGIGEEVAVPEDEKGQEELPLVEE

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=478838 IA041_RS13160 WP_187767793.1 2704125..2705174(-) (recA) [Enterococcus faecium strain AML0157]
TTGGCAGATGATCGTAAAGCAGCCTTAGATGCTGCACTGAAAAAAATTGAAAAGAGCTATGGTAAAGGCTCTATTATGAA
ATTGGTCGAAAAAATCGACCAACAAATCTCTACAATTCCAAGTGGCTCTCTTGCGTTAGATGTCGCTTTAGGTGTCGGCG
GTTACCCCCGTGGACGTATCATCGAAGTATATGGACCTGAAAGTTCAGGTAAAACAACAGTTGCACTACACGCTATTGCA
GAAGTACAAAAAAATGGCGGAACGGCCGCTTTCATTGATGCTGAGCATGCGTTAGATCCGCAATATGCACAAAAATTAGG
TGTGAATATCGATGAACTACTTCTTTCACAGCCTGACACAGGAGAACAAGGTCTAGAGATCGCTGATGCTTTAGTATCAA
GTGGGGCTGTAGATATCGTAGTAGTCGATTCAGTTGCTGCTTTAGTTCCACGAGCAGAAATCGACGGCGAAATGGGTGAC
TCACATGTCGGGTTACAAGCACGTTTGATGTCTCAAGCATTGCGTAAACTCTCTGGTTCGATCAACAAAACAAAAACAAT
CGCTATTTTCATCAACCAAATCCGTGAAAAAGTAGGCGTGATGTTTGGGAATCCAGAAATCACTCCTGGAGGACGCGCAT
TGAAATTCTACGCAACGATCCGTTTGGAAGTACGTCGTGCAGAACAATTGAAACAAGGTACAGATATTGTTGGTAACCGT
ACAAAGATCAAAGTCGTAAAAAACAAAGTAGCACCTCCTTTCAAAATCGCTGAAGTAGATGTCATGTATGGTTTAGGGAT
CTCACAAGAAGGAGAACTTCTAGACATGGCAGTAGAAAAAGACATTGTTGATAAAAGCGGTGCTTGGTATTCTTATAAAG
AAGATCGGATTGGTCAAGGACGGGAAAACGCTAAAATCTATATGGCTAATCATCCTGAAATGATGGCAGAAGTTTCTGCT
CTAGTTAGAGCAGCTTATGGTATTGGTGAAGAAGTCGCTGTCCCAGAAGATGAAAAAGGACAAGAAGAATTGCCTTTAGT
AGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

78.098

99.427

0.777
  recA Bacillus subtilis subsp. subtilis str. 168

79.077

93.123

0.736
  recA Streptococcus pneumoniae R6

69.034

100

0.696
  recA Streptococcus pneumoniae TIGR4

69.034

100

0.696
  recA Streptococcus pneumoniae Rx1

69.034

100

0.696
  recA Streptococcus pneumoniae D39

69.034

100

0.696
  recA Streptococcus mitis SK321

70.833

96.275

0.682
  recA Streptococcus mitis NCTC 12261

70.536

96.275

0.679
  recA Streptococcus pyogenes NZ131

69.486

94.842

0.659
  recA Streptococcus mutans UA159

66.282

99.427

0.659
  recA Lactococcus lactis subsp. cremoris KW2

67.173

94.269

0.633
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.303

93.696

0.593
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.058

98.281

0.59
  recA Neisseria gonorrhoeae strain FA1090

62.31

94.269

0.587
  recA Neisseria gonorrhoeae MS11

62.31

94.269

0.587
  recA Neisseria gonorrhoeae MS11

62.31

94.269

0.587
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.231

93.123

0.57
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.3

92.55

0.567
  recA Acinetobacter baumannii D1279779

61.3

92.55

0.567
  recA Vibrio cholerae strain A1552

61.3

92.55

0.567
  recA Acinetobacter baylyi ADP1

60.991

92.55

0.564
  recA Helicobacter pylori 26695

57.771

97.708

0.564
  recA Helicobacter pylori strain NCTC11637

57.771

97.708

0.564
  recA Ralstonia pseudosolanacearum GMI1000

62.62

89.685

0.562
  recA Pseudomonas stutzeri DSM 10701

60.185

92.837

0.559
  recA Glaesserella parasuis strain SC1401

60.436

91.977

0.556