Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   H8B22_RS12655 Genome accession   NZ_CP060820
Coordinates   2717679..2718716 (+) Length   345 a.a.
NCBI ID   WP_187711763.1    Uniprot ID   -
Organism   Agrilutibacter terrestris strain II4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2712679..2723716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8B22_RS12640 (H8B22_12640) - 2713552..2716209 (+) 2658 WP_225876203.1 TonB-dependent receptor -
  H8B22_RS12645 (H8B22_12645) - 2716290..2716790 (+) 501 WP_187711761.1 CinA family protein -
  H8B22_RS12650 (H8B22_12650) lexA 2716858..2717490 (+) 633 WP_187711762.1 transcriptional repressor LexA -
  H8B22_RS12655 (H8B22_12655) recA 2717679..2718716 (+) 1038 WP_187711763.1 recombinase RecA Machinery gene
  H8B22_RS12660 (H8B22_12660) - 2718739..2719236 (+) 498 WP_187711764.1 regulatory protein RecX -
  H8B22_RS12665 (H8B22_12665) alaS 2719376..2722039 (+) 2664 WP_407060853.1 alanine--tRNA ligase -
  H8B22_RS12670 (H8B22_12670) csrA 2722188..2722388 (+) 201 WP_187711766.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37135.60 Da        Isoelectric Point: 5.1866

>NTDB_id=478619 H8B22_RS12655 WP_187711763.1 2717679..2718716(+) (recA) [Agrilutibacter terrestris strain II4]
MDENKKRALTAALSQIEKQYGKGAVMRMGDQVAEPAEVIGTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQTIA
QCQKAGGTCAFVDAEHALDPTYAAKLGVNVDDLLVSQPDTGEQALEIADMLVRSNAVDMVVVDSVAALTPKAEIEGEMGD
QLPGLQARLMSQALRKLTGNIKRSNCMVIFINQLRMKIGIMMPGQSPETTTGGNALKFYASVRLDIRRIGSVKKGDEIVG
NQTRIKVVKNKLAPPFKQVVTEILYGEGISREGELIDMGVEAKLVEKSGAWYGYSGERIGQGKENARQFLKDNPALAAQL
EAALREKFQPAEARRDEGADDARED

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=478619 H8B22_RS12655 WP_187711763.1 2717679..2718716(+) (recA) [Agrilutibacter terrestris strain II4]
ATGGATGAGAACAAGAAGCGTGCCCTCACGGCAGCCCTGAGCCAGATCGAAAAGCAGTACGGCAAGGGCGCGGTCATGCG
CATGGGCGACCAGGTCGCCGAGCCGGCCGAAGTCATCGGCACCGGTTCGCTGATGCTGGACATCGCGCTGGGTATCGGCG
GCCTGCCCAAGGGCCGCGTGGTCGAGATCTACGGTCCGGAATCCTCGGGCAAGACCACCCTGACCCTGCAGACCATCGCC
CAGTGCCAGAAGGCCGGCGGCACCTGCGCCTTCGTGGACGCCGAACACGCACTCGATCCGACCTACGCCGCCAAGCTGGG
CGTGAATGTCGACGACCTGCTGGTGAGCCAGCCCGACACCGGCGAACAGGCGCTGGAAATCGCCGACATGCTGGTGCGTT
CCAACGCCGTGGACATGGTCGTGGTGGACTCGGTCGCCGCGCTGACCCCGAAGGCGGAAATCGAAGGCGAGATGGGCGAC
CAGCTCCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCCCTGCGCAAGTTGACCGGCAACATCAAGCGCAGCAACTGCAT
GGTGATCTTCATCAACCAGCTGCGAATGAAGATCGGCATCATGATGCCGGGCCAGAGCCCGGAAACCACCACCGGCGGCA
ACGCGCTCAAGTTCTACGCCTCCGTGCGCCTGGACATCCGCCGCATCGGCTCGGTGAAGAAGGGCGACGAGATCGTCGGC
AACCAGACCCGCATCAAGGTGGTGAAGAACAAGCTGGCGCCGCCGTTCAAGCAGGTCGTCACCGAAATCCTCTACGGCGA
AGGCATCTCGCGTGAAGGCGAGCTGATCGACATGGGCGTGGAAGCCAAGCTGGTCGAGAAGTCGGGCGCCTGGTACGGCT
ACAGCGGCGAGCGCATCGGGCAGGGCAAGGAGAACGCCCGCCAGTTCCTCAAGGACAACCCGGCGCTGGCCGCGCAGCTC
GAAGCGGCGCTGCGCGAGAAGTTCCAGCCGGCCGAGGCACGCCGCGACGAAGGCGCGGACGACGCGCGCGAGGACTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

74.695

95.072

0.71
  recA Vibrio cholerae strain A1552

69.364

100

0.696
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.364

100

0.696
  recA Acinetobacter baylyi ADP1

68.986

100

0.69
  recA Ralstonia pseudosolanacearum GMI1000

75.08

90.725

0.681
  recA Acinetobacter baumannii D1279779

71.646

95.072

0.681
  recA Neisseria gonorrhoeae MS11

66.959

99.13

0.664
  recA Neisseria gonorrhoeae MS11

66.959

99.13

0.664
  recA Neisseria gonorrhoeae strain FA1090

66.959

99.13

0.664
  recA Glaesserella parasuis strain SC1401

67.802

93.623

0.635
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.308

94.203

0.606
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.976

96.812

0.6
  recA Helicobacter pylori 26695

61.446

96.232

0.591
  recA Helicobacter pylori strain NCTC11637

61.145

96.232

0.588
  recA Bacillus subtilis subsp. subtilis str. 168

60.923

94.203

0.574
  recA Streptococcus mitis SK321

56.522

100

0.565
  recA Streptococcus pneumoniae TIGR4

55.908

100

0.562
  recA Streptococcus pneumoniae Rx1

55.908

100

0.562
  recA Streptococcus pneumoniae D39

55.908

100

0.562
  recA Streptococcus pneumoniae R6

55.908

100

0.562
  recA Streptococcus mutans UA159

58.788

95.652

0.562
  recA Streptococcus mitis NCTC 12261

56.232

100

0.562
  recA Streptococcus pyogenes NZ131

57.879

95.652

0.554
  recA Latilactobacillus sakei subsp. sakei 23K

58.589

94.493

0.554
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.97

95.652

0.545
  recA Lactococcus lactis subsp. cremoris KW2

56.308

94.203

0.53