Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   H9K76_RS21695 Genome accession   NZ_CP060714
Coordinates   4823507..4824598 (-) Length   363 a.a.
NCBI ID   WP_187597326.1    Uniprot ID   A0A7G9RN86
Organism   Diaphorobacter ruginosibacter strain DSM 27467     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4818507..4829598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9K76_RS21675 (H9K76_21675) - 4819408..4821873 (+) 2466 WP_187597322.1 DUF1631 family protein -
  H9K76_RS21680 (H9K76_21680) - 4821885..4822436 (+) 552 WP_187597323.1 DUF4234 domain-containing protein -
  H9K76_RS21685 (H9K76_21685) - 4822455..4822871 (+) 417 WP_187597324.1 hypothetical protein -
  H9K76_RS21690 (H9K76_21690) recX 4822892..4823377 (-) 486 WP_187597325.1 recombination regulator RecX -
  H9K76_RS21695 (H9K76_21695) recA 4823507..4824598 (-) 1092 WP_187597326.1 recombinase RecA Machinery gene
  H9K76_RS21700 (H9K76_21700) - 4824779..4825273 (+) 495 WP_187597327.1 MarR family winged helix-turn-helix transcriptional regulator -
  H9K76_RS21705 (H9K76_21705) - 4825255..4825830 (-) 576 WP_187597328.1 phosphonate degradation HD-domain oxygenase -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 38704.17 Da        Isoelectric Point: 4.7088

>NTDB_id=477981 H9K76_RS21695 WP_187597326.1 4823507..4824598(-) (recA) [Diaphorobacter ruginosibacter strain DSM 27467]
MDTTVKSTVDTSEKAKALQAALAQIEKQFGKGTIMRLGEGEKIEDIQVVSTGSLGLDVALGVGGLPRGRVVEIYGPESSG
KTTLTLQVIAEMQKQGGTCAFIDAEHALDTSYAQKLGVNLSDMLISQPDTGEQALEIVDSLVRSGAVDLIVVDSVAALTP
KAEIEGEMGDALPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGTI
KKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIIDMGVNARIIEKSGAWYAYNGEKIGQGRDNSREFLRE
NRDLAIEIENKVRESLNIPLIGVTAVAAAPGAGGDEAEDDGEA

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=477981 H9K76_RS21695 WP_187597326.1 4823507..4824598(-) (recA) [Diaphorobacter ruginosibacter strain DSM 27467]
ATGGACACCACTGTGAAGAGCACCGTAGACACCAGCGAAAAGGCCAAGGCGCTGCAAGCCGCCCTGGCACAGATCGAAAA
GCAGTTCGGCAAGGGCACCATCATGCGCCTGGGCGAAGGCGAGAAGATCGAGGACATCCAGGTCGTCTCCACCGGTTCGC
TGGGCCTTGACGTTGCGCTGGGCGTGGGCGGCCTGCCCCGCGGCCGTGTGGTCGAGATCTACGGTCCCGAAAGCTCGGGC
AAGACCACGCTCACGCTGCAGGTCATTGCCGAAATGCAGAAGCAGGGCGGCACCTGCGCGTTCATCGATGCGGAACATGC
GCTCGACACCTCCTATGCGCAAAAGCTTGGCGTGAACCTCAGCGACATGCTGATCAGCCAGCCCGACACCGGCGAGCAGG
CGCTCGAGATTGTCGATTCACTGGTGCGCTCCGGCGCGGTGGACCTGATCGTCGTCGACTCGGTCGCCGCGCTCACGCCC
AAGGCAGAAATCGAAGGCGAGATGGGCGACGCCCTGCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCACTGCGCAAGCT
CACCGCAACCATCAAGAAGACCAATTGCATGGTCATCTTCATCAATCAGATCCGCATGAAGATCGGCGTGATGTTCGGTT
CGCCCGAGACCACCACCGGCGGCAATGCGCTGAAGTTCTACGCCTCCGTGCGTCTCGACATCCGCCGCACTGGAACCATC
AAGAAGGGCGACGAGGCCATCGGCAACGAGACCAAGGTGAAGGTCGTGAAGAACAAGGTCTCGCCTCCGTTCAAGACGGC
CGAGTTCGACATCCTGTTCGGCGAAGGCATCTCGCGCGAGGGCGAAATCATCGACATGGGCGTGAACGCGCGCATCATCG
AGAAGAGCGGTGCCTGGTATGCCTACAACGGCGAGAAGATCGGCCAGGGCCGCGACAACTCGCGCGAATTCCTGCGCGAG
AACCGCGACCTCGCCATCGAGATCGAGAACAAGGTGCGCGAGTCGCTGAACATCCCGCTGATCGGCGTGACTGCCGTGGC
CGCGGCGCCTGGCGCGGGCGGCGACGAGGCCGAGGACGACGGCGAAGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(16-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9RN86

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

79.827

95.592

0.763
  recA Pseudomonas stutzeri DSM 10701

72.446

88.981

0.645
  recA Glaesserella parasuis strain SC1401

69.552

92.287

0.642
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.437

93.388

0.639
  recA Vibrio cholerae strain A1552

68.437

93.388

0.639
  recA Neisseria gonorrhoeae MS11

71.827

88.981

0.639
  recA Neisseria gonorrhoeae MS11

71.827

88.981

0.639
  recA Neisseria gonorrhoeae strain FA1090

71.827

88.981

0.639
  recA Acinetobacter baylyi ADP1

71.207

88.981

0.634
  recA Acinetobacter baumannii D1279779

70.898

88.981

0.631
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.172

92.837

0.614
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.791

89.807

0.609
  recA Bacillus subtilis subsp. subtilis str. 168

63.964

91.736

0.587
  recA Helicobacter pylori 26695

64.923

89.532

0.581
  recA Helicobacter pylori strain NCTC11637

64.923

89.532

0.581
  recA Latilactobacillus sakei subsp. sakei 23K

64.22

90.083

0.579
  recA Lactococcus lactis subsp. cremoris KW2

61.656

89.807

0.554
  recA Streptococcus pyogenes NZ131

61.538

89.532

0.551
  recA Streptococcus mutans UA159

61.231

89.532

0.548
  recA Streptococcus pneumoniae Rx1

59.517

91.185

0.543
  recA Streptococcus pneumoniae D39

59.517

91.185

0.543
  recA Streptococcus pneumoniae R6

59.517

91.185

0.543
  recA Streptococcus pneumoniae TIGR4

59.517

91.185

0.543
  recA Streptococcus mitis NCTC 12261

60.123

89.807

0.54
  recA Streptococcus mitis SK321

60.123

89.807

0.54
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.574

90.634

0.54