Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   NMV_RS04670 Genome accession   NC_017501
Coordinates   939665..940711 (+) Length   348 a.a.
NCBI ID   WP_002223618.1    Uniprot ID   A0A1V0G7E1
Organism   Neisseria meningitidis 8013     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 934665..945711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMV_RS04650 (NMV_0937) - 934935..935342 (+) 408 Protein_844 fe(3+)-pyochelin receptor -
  NMV_RS04655 (NMV_0938) dinB 935486..936544 (+) 1059 WP_002219070.1 DNA polymerase IV -
  NMV_RS04660 (NMV_0939) rep 936612..938627 (-) 2016 WP_002222281.1 DNA helicase Rep -
  NMV_RS04665 (NMV_0940) aroD 938647..939411 (-) 765 WP_002222282.1 type I 3-dehydroquinate dehydratase -
  NMV_RS04670 (NMV_0941) recA 939665..940711 (+) 1047 WP_002223618.1 recombinase RecA Machinery gene
  NMV_RS04680 (NMV_0942) - 942663..942998 (-) 336 WP_002216924.1 YbaB/EbfC family nucleoid-associated protein -
  NMV_RS04685 (NMV_0943) dnaX 943079..945208 (-) 2130 WP_014573920.1 DNA polymerase III subunit gamma/tau -

Sequence


Protein


Download         Length: 348 a.a.        Molecular weight: 37626.87 Da        Isoelectric Point: 4.8330

>NTDB_id=47739 NMV_RS04670 WP_002223618.1 939665..940711(+) (recA) [Neisseria meningitidis 8013]
MSDDKSKALAAALAQIEKSFGKGAIMKMDGSQQEENLEVISTGSLGLDLALGVGGLPRGRIVEIFGPESSGKTTLCLEAV
AQCQKNGGVCAFVDAEHAFDPVYARKLGVKVEELYLSQPDTGEQALEICDTLVRSGGIDMVVVDSVAALVPKAEIEGDMG
DSHVGLQARLMSQALRKLTGHIKKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGSIKKGEEVLGN
ETRVKVIKNKVAPPFRQAEFDILYGEGISWEGELIDIGVKNDIINKSGAWYSYNGAKIGQGKDNVRVWLKENPEIADEID
AKIRALNGVEMHITEGTQDETDGERPEE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=47739 NMV_RS04670 WP_002223618.1 939665..940711(+) (recA) [Neisseria meningitidis 8013]
ATGTCAGACGACAAAAGCAAAGCCCTTGCCGCCGCCTTGGCGCAAATCGAAAAAAGTTTCGGCAAAGGCGCCATCATGAA
AATGGACGGCAGCCAGCAGGAAGAAAACCTCGAAGTCATTTCCACCGGATCGCTCGGATTAGACCTCGCACTCGGAGTCG
GCGGCCTGCCGCGCGGGCGCATCGTCGAAATCTTCGGCCCCGAATCCTCCGGCAAAACCACACTCTGCCTCGAAGCCGTC
GCCCAATGCCAGAAAAACGGCGGCGTGTGCGCCTTTGTCGATGCCGAACACGCCTTTGATCCCGTTTACGCCCGCAAACT
CGGCGTAAAAGTCGAAGAGCTTTACCTGTCCCAGCCCGATACCGGCGAACAGGCTTTGGAAATCTGCGACACACTCGTCC
GTTCAGGCGGCATAGATATGGTAGTCGTCGATTCCGTAGCCGCACTCGTCCCCAAAGCCGAAATCGAAGGCGATATGGGG
GACAGCCATGTCGGACTGCAGGCGCGCCTGATGAGTCAGGCTTTGCGCAAACTGACCGGACACATCAAAAAAACCAACAC
GCTGGTTGTGTTCATCAACCAAATCCGGATGAAGATCGGCGTAATGTTCGGCAGCCCCGAAACCACCACCGGCGGCAACG
CGCTGAAATTCTATTCTTCCGTCCGCCTCGACATCCGCCGCACCGGATCCATCAAAAAAGGCGAAGAAGTATTGGGCAAC
GAAACCCGCGTCAAAGTCATCAAAAACAAAGTCGCCCCCCCGTTCCGTCAGGCAGAGTTTGACATCCTCTACGGAGAAGG
CATCAGTTGGGAAGGCGAATTAATCGACATCGGCGTGAAAAACGACATCATCAACAAATCCGGCGCGTGGTACAGCTACA
ACGGCGCGAAAATCGGTCAGGGCAAAGACAACGTCCGCGTCTGGCTGAAGGAAAATCCCGAAATTGCCGACGAAATCGAC
GCAAAAATTCGCGCCCTCAACGGCGTAGAAATGCACATCACCGAAGGGACGCAGGACGAAACCGACGGCGAACGCCCCGA
AGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A1V0G7E1

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae MS11

99.713

100

0.997

  recA Neisseria gonorrhoeae strain FA1090

99.713

100

0.997

  recA Neisseria gonorrhoeae MS11

99.713

100

0.997

  recA Ralstonia pseudosolanacearum GMI1000

74.772

94.54

0.707

  recA Vibrio cholerae O1 biovar El Tor strain E7946

67.232

100

0.684

  recA Vibrio cholerae strain A1552

67.232

100

0.684

  recA Glaesserella parasuis strain SC1401

67.806

100

0.684

  recA Pseudomonas stutzeri DSM 10701

71.692

93.391

0.67

  recA Acinetobacter baylyi ADP1

66.571

99.713

0.664

  recA Acinetobacter baumannii D1279779

65.805

100

0.658

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.396

97.989

0.641

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.378

94.253

0.635

  recA Helicobacter pylori 26695

67.385

93.391

0.629

  recA Helicobacter pylori strain NCTC11637

67.077

93.391

0.626

  recA Bacillus subtilis subsp. subtilis str. 168

65.138

93.966

0.612

  recA Streptococcus mutans UA159

60.684

100

0.612

  recA Streptococcus pneumoniae TIGR4

59.544

100

0.601

  recA Streptococcus pneumoniae Rx1

59.544

100

0.601

  recA Streptococcus pneumoniae D39

59.544

100

0.601

  recA Streptococcus pneumoniae R6

59.544

100

0.601

  recA Streptococcus mitis NCTC 12261

59.884

98.851

0.592

  recA Latilactobacillus sakei subsp. sakei 23K

62.691

93.966

0.589

  recA Streptococcus pyogenes NZ131

61.963

93.678

0.58

  recA Streptococcus mitis SK321

60.606

94.828

0.575

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.121

95.115

0.572

  recA Lactococcus lactis subsp. cremoris KW2

60.303

94.828

0.572


Multiple sequence alignment