Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   H7V21_RS02010 Genome accession   NZ_CP060494
Coordinates   427068..428153 (-) Length   361 a.a.
NCBI ID   WP_188054975.1    Uniprot ID   -
Organism   Sphingosinithalassobacter sp. CS137     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 422068..433153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7V21_RS01995 - 423657..424904 (-) 1248 WP_410482679.1 M24 family metallopeptidase -
  H7V21_RS02000 - 424904..426223 (-) 1320 WP_188054973.1 dicarboxylate/amino acid:cation symporter -
  H7V21_RS02005 - 426252..426893 (-) 642 WP_188054974.1 glutathione S-transferase family protein -
  H7V21_RS02010 recA 427068..428153 (-) 1086 WP_188054975.1 recombinase RecA Machinery gene
  H7V21_RS02015 - 428289..428726 (+) 438 WP_188054976.1 acyl carrier protein -
  H7V21_RS02020 - 428737..429090 (-) 354 WP_188054977.1 response regulator -
  H7V21_RS02025 - 429236..431626 (-) 2391 WP_188054978.1 PAS domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 361 a.a.        Molecular weight: 38706.35 Da        Isoelectric Point: 5.3496

>NTDB_id=476339 H7V21_RS02010 WP_188054975.1 427068..428153(-) (recA) [Sphingosinithalassobacter sp. CS137]
MAASLKVIDGKMAASTDKAAGDRQKALDAALAQIDRAFGKGSAMKLGQKEAMQVEAISTGSLGLDIALGVGGLPRGRVIE
VYGPESSGKTTLALHVIAEAQRMGGTAAFVDAEHALDPVYARKLGVDIDELIVSQPDTGEQALEITDTLVRSNAIDVLVV
DSVAALVPRAEIEGEMGDSHVGLQARLMSQSLRKLTGSISRSRCMVIFINQLRMKIGVMYGNPETTTGGNALKFYASVRL
DIRRTGQIKDRDDIVGNSTRVKVVKNKVAPPFKQVEFDIMYGEGISKIGEILDLGVKAGLVEKAGAWFSYDSVRIGQGRE
NAKTFLKENPEICQRLEAAIRGRTEQVAEEMMTGPDAEDDL

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=476339 H7V21_RS02010 WP_188054975.1 427068..428153(-) (recA) [Sphingosinithalassobacter sp. CS137]
ATGGCGGCATCTCTCAAGGTGATCGACGGCAAGATGGCAGCATCCACGGACAAGGCGGCGGGCGACCGCCAGAAGGCGCT
CGACGCGGCGCTCGCCCAGATCGACCGCGCGTTCGGCAAGGGCAGCGCGATGAAGCTCGGCCAGAAGGAGGCGATGCAGG
TCGAGGCGATCTCGACCGGCTCGCTCGGGCTCGACATCGCGCTCGGCGTCGGCGGCCTGCCGCGCGGCCGCGTGATCGAA
GTCTATGGGCCGGAAAGCTCGGGCAAGACCACGCTCGCGCTCCACGTCATCGCCGAGGCGCAGCGGATGGGCGGCACCGC
CGCCTTCGTCGACGCCGAGCATGCGCTCGATCCGGTCTATGCCCGCAAGCTGGGCGTCGACATCGACGAGCTGATCGTCT
CGCAGCCCGATACCGGCGAGCAGGCGCTCGAGATCACCGACACGCTCGTCCGCTCGAACGCGATCGACGTGCTGGTGGTC
GATTCGGTCGCCGCGCTCGTCCCGCGTGCCGAGATCGAAGGCGAGATGGGCGACAGCCATGTCGGCCTGCAGGCGCGGCT
GATGTCGCAGTCGCTGCGCAAGCTCACCGGCTCGATCAGCCGATCGCGCTGCATGGTGATCTTCATCAACCAGCTGCGCA
TGAAGATCGGCGTGATGTACGGCAACCCCGAGACGACGACGGGCGGCAACGCGCTCAAATTCTACGCCTCGGTCCGTCTC
GACATCCGCCGTACCGGCCAGATCAAGGATCGCGACGACATCGTCGGCAATTCGACGCGCGTGAAGGTGGTGAAGAACAA
GGTCGCCCCGCCGTTCAAGCAGGTCGAATTCGACATCATGTACGGCGAGGGCATTTCCAAGATCGGCGAGATCCTCGATC
TGGGCGTGAAGGCCGGGCTGGTCGAGAAGGCGGGCGCCTGGTTCAGCTACGACAGTGTCCGCATCGGCCAGGGACGCGAG
AACGCCAAGACCTTCCTCAAGGAAAATCCCGAGATCTGTCAGCGGCTCGAGGCCGCGATCCGCGGCCGCACCGAGCAGGT
CGCCGAGGAGATGATGACCGGCCCCGACGCCGAGGACGATCTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(25-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

68.639

93.629

0.643
  recA Ralstonia pseudosolanacearum GMI1000

68.769

92.244

0.634
  recA Vibrio cholerae O1 biovar El Tor strain E7946

67.761

92.798

0.629
  recA Vibrio cholerae strain A1552

67.761

92.798

0.629
  recA Glaesserella parasuis strain SC1401

69.906

88.366

0.618
  recA Neisseria gonorrhoeae MS11

69.159

88.92

0.615
  recA Neisseria gonorrhoeae MS11

69.159

88.92

0.615
  recA Neisseria gonorrhoeae strain FA1090

69.159

88.92

0.615
  recA Bacillus subtilis subsp. subtilis str. 168

68.125

88.643

0.604
  recA Acinetobacter baylyi ADP1

67.812

88.643

0.601
  recA Acinetobacter baumannii D1279779

67.812

88.643

0.601
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.941

94.183

0.593
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.337

90.305

0.59
  recA Helicobacter pylori strain NCTC11637

62.13

93.629

0.582
  recA Helicobacter pylori 26695

61.834

93.629

0.579
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.31

93.075

0.571
  recA Streptococcus pneumoniae TIGR4

58.074

97.784

0.568
  recA Streptococcus pneumoniae Rx1

58.074

97.784

0.568
  recA Streptococcus pneumoniae D39

58.074

97.784

0.568
  recA Streptococcus pneumoniae R6

58.074

97.784

0.568
  recA Streptococcus mitis NCTC 12261

60.597

92.798

0.562
  recA Streptococcus mitis SK321

60.299

92.798

0.56
  recA Latilactobacillus sakei subsp. sakei 23K

62.539

89.474

0.56
  recA Streptococcus pyogenes NZ131

60.303

91.413

0.551
  recA Streptococcus mutans UA159

60

91.413

0.548
  recA Lactococcus lactis subsp. cremoris KW2

57.879

91.413

0.529