Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   H8F24_RS08395 Genome accession   NZ_CP060398
Coordinates   1754699..1755949 (+) Length   416 a.a.
NCBI ID   WP_231598188.1    Uniprot ID   -
Organism   Synechococcus sp. CBW1002     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1749699..1760949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8F24_RS08370 (H8F24_08365) - 1749869..1750330 (+) 462 WP_197158906.1 NAD(P)H-quinone oxidoreductase subunit N -
  H8F24_RS08375 (H8F24_08370) - 1750367..1751455 (+) 1089 WP_370594820.1 LdpA C-terminal domain-containing domain -
  H8F24_RS08380 (H8F24_08375) - 1751552..1753279 (+) 1728 WP_231598187.1 AAA family ATPase -
  H8F24_RS08390 (H8F24_08385) - 1753584..1754303 (+) 720 WP_197172158.1 HAD family hydrolase -
  H8F24_RS08395 (H8F24_08390) recA 1754699..1755949 (+) 1251 WP_231598188.1 recombinase RecA Machinery gene
  H8F24_RS08400 (H8F24_08395) - 1756003..1756401 (-) 399 WP_197171721.1 DUF1815 family protein -
  H8F24_RS08405 (H8F24_08400) - 1756547..1756792 (-) 246 WP_197171723.1 DUF2839 domain-containing protein -
  H8F24_RS08410 (H8F24_08405) - 1756822..1758294 (-) 1473 WP_197171725.1 helicase -
  H8F24_RS08415 (H8F24_08410) - 1758337..1759293 (+) 957 WP_197171727.1 prephenate/arogenate dehydrogenase -
  H8F24_RS08420 (H8F24_08415) crtD 1759304..1760848 (-) 1545 WP_197171729.1 C-3',4' desaturase CrtD -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 43845.76 Da        Isoelectric Point: 6.0054

>NTDB_id=475714 H8F24_RS08395 WP_231598188.1 1754699..1755949(+) (recA) [Synechococcus sp. CBW1002]
MTPDSKAVSAASRSLEARSASERDKALGLVLNQIERNFGKGSIMRLGDASRMRVETVSTGALTLDLALGGGYPKGRVVEV
YGPESSGKTTLTLHAIAEVQRRGGVAAFVDAEHALDPVYAAALGVDIENLLVSQPDTGEMALEIVDQLVRSAAVDIVVID
SVAALTPRAEIEGEMGDLAVGSQARLMSQAMRKITGNIGKSGCTVIFLNQLRQKIGVTYGNPETTTGGNALKFYASVRLD
IRRIQTLKRGTEEYGIRAKVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEEIGVVTRKGSWYSYEGDNIGQGRDN
TIIWLEQNPEQKERIEAITRQKLTEGSEVTANSLRPLAAAAKLSADLSDDPARALVEDLGAAPLELNAPAAAGSPAGATA
GTRSSSRSTAPAATGG

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=475714 H8F24_RS08395 WP_231598188.1 1754699..1755949(+) (recA) [Synechococcus sp. CBW1002]
ATGACCCCTGACTCCAAGGCCGTGTCCGCCGCCTCCCGCAGCCTCGAGGCCCGCTCCGCCAGCGAGCGTGACAAGGCGCT
GGGCCTGGTGCTGAACCAGATCGAGCGCAACTTCGGCAAGGGCTCGATCATGCGACTGGGCGACGCCTCCCGCATGCGGG
TGGAAACCGTCTCCACCGGCGCCCTGACCCTGGATCTGGCTCTGGGGGGCGGCTATCCCAAGGGCCGGGTGGTGGAGGTC
TATGGCCCTGAAAGTTCCGGCAAGACCACCCTCACGCTCCATGCCATCGCCGAGGTGCAACGCCGCGGTGGCGTTGCGGC
CTTCGTTGATGCCGAGCATGCGCTCGACCCGGTCTACGCCGCGGCCCTCGGAGTGGATATCGAGAACCTGCTGGTCTCCC
AGCCGGATACCGGTGAGATGGCCCTGGAGATCGTCGACCAGCTGGTGCGCTCAGCCGCCGTCGACATCGTCGTGATCGAT
TCGGTGGCGGCGTTGACGCCCCGGGCCGAAATTGAGGGAGAGATGGGCGATCTGGCGGTGGGCAGCCAGGCCCGCCTGAT
GAGTCAGGCGATGCGCAAGATCACCGGCAACATCGGCAAGTCCGGCTGCACGGTGATCTTCCTCAACCAGCTGCGGCAAA
AGATCGGTGTCACCTATGGCAATCCCGAAACCACCACCGGTGGGAATGCGCTGAAGTTCTACGCCTCGGTGCGGCTCGAC
ATCCGCCGGATCCAGACGCTCAAGCGCGGCACCGAGGAATACGGCATTCGCGCCAAGGTGAAGGTGGCCAAGAACAAGGT
GGCTCCACCCTTCCGCATCGCCGAGTTCGACATCCTGTTCGGCCGGGGCATCAGCACCCTCGGTTGCCTGCTGGATCTGG
CCGAGGAAATCGGGGTGGTGACGCGTAAGGGATCCTGGTACAGCTACGAGGGCGACAACATCGGCCAGGGCCGTGATAAC
ACCATCATCTGGCTGGAGCAGAACCCCGAGCAGAAGGAGCGGATCGAGGCGATCACCCGCCAGAAACTCACGGAAGGATC
GGAGGTGACGGCCAACTCGTTGCGGCCCCTGGCGGCGGCAGCCAAGCTGAGCGCTGACCTGTCCGATGATCCGGCCCGCG
CCCTGGTCGAGGATCTTGGCGCTGCACCGCTTGAGTTGAATGCTCCTGCGGCGGCCGGGTCCCCTGCAGGTGCCACGGCT
GGAACCCGATCTTCCTCGCGCAGCACAGCTCCTGCGGCCACCGGCGGCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(25-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

64.955

79.567

0.517
  recA Acinetobacter baumannii D1279779

64.286

77.404

0.498
  recA Glaesserella parasuis strain SC1401

59.026

83.894

0.495
  recA Pseudomonas stutzeri DSM 10701

63.354

77.404

0.49
  recA Neisseria gonorrhoeae MS11

58.551

82.933

0.486
  recA Neisseria gonorrhoeae MS11

58.551

82.933

0.486
  recA Neisseria gonorrhoeae strain FA1090

58.551

82.933

0.486
  recA Ralstonia pseudosolanacearum GMI1000

64.63

74.76

0.483
  recA Bacillus subtilis subsp. subtilis str. 168

63.666

74.76

0.476
  recA Vibrio cholerae strain A1552

61.491

77.404

0.476
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.491

77.404

0.476
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.271

79.087

0.469
  recA Helicobacter pylori 26695

57.101

81.25

0.464
  recA Helicobacter pylori strain NCTC11637

57.101

81.25

0.464
  recA Latilactobacillus sakei subsp. sakei 23K

59.688

76.923

0.459
  recA Lactococcus lactis subsp. cremoris KW2

56.047

81.49

0.457
  recA Streptococcus pneumoniae R6

55.588

81.731

0.454
  recA Streptococcus pneumoniae TIGR4

55.588

81.731

0.454
  recA Streptococcus pneumoniae D39

55.588

81.731

0.454
  recA Streptococcus pneumoniae Rx1

55.588

81.731

0.454
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.383

75.24

0.454
  recA Streptococcus mitis NCTC 12261

55.457

81.49

0.452
  recA Streptococcus mitis SK321

55.621

81.25

0.452
  recA Streptococcus pyogenes NZ131

52.235

86.058

0.45
  recA Streptococcus mutans UA159

55.522

80.529

0.447
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.176

76.442

0.445