Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   H8F25_RS15005 Genome accession   NZ_CP060397
Coordinates   3159992..3161188 (+) Length   398 a.a.
NCBI ID   WP_197211094.1    Uniprot ID   A0A7T1HW89
Organism   Synechococcus sp. CBW1004     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3154992..3166188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8F25_RS14985 (H8F25_14975) - 3155815..3156936 (+) 1122 WP_231596888.1 LdpA C-terminal domain-containing domain -
  H8F25_RS14990 (H8F25_14980) - 3157083..3158759 (+) 1677 WP_197211092.1 AAA family ATPase -
  H8F25_RS15000 (H8F25_14990) - 3158967..3159743 (+) 777 WP_197211093.1 HAD family hydrolase -
  H8F25_RS15005 (H8F25_14995) recA 3159992..3161188 (+) 1197 WP_197211094.1 recombinase RecA Machinery gene
  H8F25_RS15010 (H8F25_15000) - 3161589..3162017 (-) 429 WP_197211095.1 DUF1815 family protein -
  H8F25_RS15015 (H8F25_15005) - 3162171..3162413 (-) 243 WP_197211096.1 DUF2839 domain-containing protein -
  H8F25_RS15020 (H8F25_15010) - 3162459..3163910 (-) 1452 WP_197211097.1 helicase -
  H8F25_RS15025 (H8F25_15015) - 3163954..3164832 (+) 879 WP_197211098.1 prephenate/arogenate dehydrogenase -

Sequence

Protein


Download         Length: 398 a.a.        Molecular weight: 41976.58 Da        Isoelectric Point: 5.6241

>NTDB_id=475707 H8F25_RS15005 WP_197211094.1 3159992..3161188(+) (recA) [Synechococcus sp. CBW1004]
MPADPKATDSRSSSSSAAAAARATAVDARAAAERDKALGLVLNQIERNFGKGSIVRLGDASRMRVETINTGALTLDLALG
GGYPKGRVVEVYGPESSGKTTLTLHAIAEVQKRGGVAAFVDAEHALDPVYAAALGVDIENLLVSQPDTGEMALEIVDQLV
RSGAVDIVVVDSVAALTPRAEIEGEMGDLAVGSQARLMSQAMRKITGNIGKSGCTVIFLNQLRQKIGVTYGNPETTTGGN
ALKFYASVRLDIRRIQTLKRGTEEYGIRAKVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVTRKGAWYSY
EGDNIGQGRDNTIGWLEQNPSEKETIEQLTRRKLMEGSEVTANSMKPLAAAARVAATASGNGAEEAAKSDLEELASAG

Nucleotide


Download         Length: 1197 bp        

>NTDB_id=475707 H8F25_RS15005 WP_197211094.1 3159992..3161188(+) (recA) [Synechococcus sp. CBW1004]
ATGCCCGCTGATCCCAAGGCCACCGACTCCCGGAGTTCCTCCTCCTCCGCGGCCGCCGCCGCCCGGGCCACGGCTGTTGA
CGCCCGGGCCGCCGCCGAGCGGGACAAGGCGCTGGGCCTGGTGCTCAACCAGATCGAGCGCAACTTCGGCAAGGGCTCGA
TCGTCCGCCTCGGCGACGCCTCCCGCATGCGGGTGGAGACGATCAACACCGGTGCCCTCACCCTCGATCTCGCCCTCGGC
GGCGGCTATCCCAAAGGCCGGGTGGTGGAGGTCTACGGCCCGGAGAGCTCCGGCAAGACCACCCTCACCCTGCATGCCAT
CGCCGAGGTGCAGAAGCGCGGCGGTGTGGCGGCCTTCGTCGATGCTGAGCATGCCCTCGACCCGGTGTATGCCGCCGCCC
TCGGGGTCGACATCGAGAACCTGCTGGTCTCCCAGCCCGACACCGGTGAGATGGCCCTCGAGATCGTCGACCAGCTGGTG
CGCTCCGGTGCGGTCGACATCGTCGTGGTCGACTCGGTGGCGGCACTGACACCCCGTGCCGAGATCGAAGGTGAGATGGG
TGATCTGGCTGTGGGCAGCCAGGCCCGCCTGATGAGCCAGGCGATGCGCAAGATCACCGGCAACATCGGCAAGTCGGGCT
GCACGGTGATCTTCCTCAACCAGCTGCGTCAGAAGATCGGCGTCACCTACGGCAATCCGGAGACCACCACCGGCGGTAAT
GCGCTCAAGTTCTATGCCTCGGTGCGTCTCGACATCCGTCGCATCCAGACCCTCAAGCGAGGCACCGAGGAGTACGGCAT
CCGCGCCAAGGTGAAGGTGGCCAAGAACAAGGTGGCGCCGCCGTTCCGCATCGCCGAGTTCGACATTCTCTTCGGCCGCG
GCATCAGCACCCTCGGCTGCCTGCTCGACCTGGCGGAGGAGACCGGTGTGGTCACCCGCAAGGGCGCCTGGTACAGCTAC
GAGGGCGACAACATCGGCCAGGGGCGCGACAACACGATCGGCTGGCTTGAGCAGAACCCCTCCGAGAAGGAGACGATCGA
GCAGCTCACCCGCCGCAAGCTGATGGAGGGTTCCGAGGTCACCGCCAATTCGATGAAGCCCCTGGCGGCTGCGGCTCGGG
TGGCCGCCACCGCCTCAGGCAATGGTGCCGAAGAAGCGGCCAAGTCCGATCTCGAGGAGCTGGCCAGCGCCGGCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(36-296)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T1HW89

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

65.325

81.156

0.53
  recA Acinetobacter baumannii D1279779

64.396

81.156

0.523
  recA Pseudomonas stutzeri DSM 10701

63.158

81.156

0.513
  recA Glaesserella parasuis strain SC1401

60.542

83.417

0.505
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.61

81.156

0.5
  recA Vibrio cholerae strain A1552

61.61

81.156

0.5
  recA Ralstonia pseudosolanacearum GMI1000

63.987

78.141

0.5
  recA Helicobacter pylori strain NCTC11637

58.58

84.925

0.497
  recA Helicobacter pylori 26695

58.58

84.925

0.497
  recA Bacillus subtilis subsp. subtilis str. 168

61.682

80.653

0.497
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.271

82.663

0.49
  recA Streptococcus mitis NCTC 12261

55.398

88.442

0.49
  recA Neisseria gonorrhoeae MS11

62.581

77.889

0.487
  recA Neisseria gonorrhoeae MS11

62.581

77.889

0.487
  recA Neisseria gonorrhoeae strain FA1090

62.581

77.889

0.487
  recA Latilactobacillus sakei subsp. sakei 23K

59.509

81.91

0.487
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.006

79.899

0.487
  recA Streptococcus pneumoniae R6

55.685

86.181

0.48
  recA Streptococcus pneumoniae TIGR4

55.685

86.181

0.48
  recA Streptococcus pneumoniae D39

55.685

86.181

0.48
  recA Streptococcus pneumoniae Rx1

55.685

86.181

0.48
  recA Lactococcus lactis subsp. cremoris KW2

55.556

85.93

0.477
  recA Streptococcus mitis SK321

55.718

85.678

0.477
  recA Streptococcus mutans UA159

57.538

81.658

0.47
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.881

82.161

0.467
  recA Streptococcus pyogenes NZ131

55.963

82.161

0.46