Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   H8F27_RS10225 Genome accession   NZ_CP060395
Coordinates   1888910..1890106 (+) Length   398 a.a.
NCBI ID   WP_231596191.1    Uniprot ID   -
Organism   Synechococcus sp. CBW1108     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1883910..1895106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8F27_RS10200 (H8F27_10190) - 1884641..1885102 (+) 462 WP_197148013.1 NAD(P)H-quinone oxidoreductase subunit N -
  H8F27_RS10205 (H8F27_10195) - 1885095..1886132 (+) 1038 WP_231596189.1 LdpA C-terminal domain-containing domain -
  H8F27_RS10210 (H8F27_10200) - 1886129..1887802 (+) 1674 WP_231596190.1 AAA family ATPase -
  H8F27_RS10220 (H8F27_10210) - 1887969..1888733 (+) 765 WP_197148014.1 HAD family hydrolase -
  H8F27_RS10225 (H8F27_10215) recA 1888910..1890106 (+) 1197 WP_231596191.1 recombinase RecA Machinery gene
  H8F27_RS10230 (H8F27_10220) - 1890140..1890517 (-) 378 WP_197148016.1 DUF1815 family protein -
  H8F27_RS10235 (H8F27_10225) - 1890556..1890819 (-) 264 WP_197148017.1 DUF2839 domain-containing protein -
  H8F27_RS10240 (H8F27_10230) - 1890858..1892297 (-) 1440 WP_197148018.1 helicase -
  H8F27_RS10245 (H8F27_10235) - 1892364..1893287 (+) 924 WP_197148019.1 prephenate/arogenate dehydrogenase -
  H8F27_RS10250 (H8F27_10240) crtD 1893316..1894842 (-) 1527 WP_197148020.1 C-3',4' desaturase CrtD -

Sequence

Protein


Download         Length: 398 a.a.        Molecular weight: 41987.76 Da        Isoelectric Point: 6.5248

>NTDB_id=475683 H8F27_RS10225 WP_231596191.1 1888910..1890106(+) (recA) [Synechococcus sp. CBW1108]
MAADPRSNSLSSPSSSSSVSSSSSASRPSAGAAAEREKALGLVLNQIERNFGKGSIMRLGDASRMRVETISTGALTLDLA
LGGGYPKGRVVEVYGPESSGKTTLTLHAIAEVQKRGGVAAFVDAEHALDPVYAAALGVDIENLLVSQPDTGEMALEIVDQ
LVRSAAVDIVVIDSVAALTPRAEIEGEMGDLAVGAQARLMSQAMRKITGNIGKSGCTVIFLNQLRQKIGVTYGNPETTTG
GNALKFYASVRLDIRRIQTLKRGTEEYGIRAKVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVVRKGAWY
SYEGDNIGQGRDNTIIWLEQNPKQAELIEQLTRQKLKEGSEVTSNSMKPLAAAAKAAAATGSVKEDPATELADLPVAS

Nucleotide


Download         Length: 1197 bp        

>NTDB_id=475683 H8F27_RS10225 WP_231596191.1 1888910..1890106(+) (recA) [Synechococcus sp. CBW1108]
ATGGCTGCCGATCCCCGCTCCAATTCCCTTTCCTCCCCTTCCTCCAGTTCGTCGGTGTCTTCCTCCTCTTCCGCTTCTCG
CCCGTCTGCCGGTGCCGCCGCTGAGCGTGAGAAGGCCTTGGGGCTGGTGCTCAACCAGATCGAGCGCAATTTCGGCAAGG
GTTCGATCATGCGATTGGGGGATGCTTCCCGCATGAGGGTGGAAACCATCTCCACCGGGGCGCTCACCCTTGATCTGGCC
CTGGGTGGCGGCTACCCCAAGGGTCGGGTGGTGGAGGTTTACGGGCCGGAGAGCTCTGGTAAGACCACCCTCACCTTGCA
TGCCATTGCCGAGGTGCAGAAGCGAGGTGGTGTGGCCGCTTTTGTGGACGCGGAGCATGCCCTCGACCCGGTCTATGCAG
CGGCCCTTGGCGTTGACATTGAAAACCTGCTGGTCTCCCAACCGGATACCGGTGAGATGGCCCTGGAGATAGTCGACCAG
CTGGTGCGTTCAGCCGCCGTGGACATCGTGGTGATCGATTCGGTGGCGGCCTTGACCCCCCGCGCTGAAATTGAAGGTGA
AATGGGGGATTTGGCTGTGGGTGCCCAGGCTCGCCTGATGAGCCAGGCCATGCGCAAGATCACCGGCAACATCGGTAAGT
CAGGCTGCACGGTGATTTTTCTCAACCAGTTGCGCCAGAAGATTGGCGTTACCTACGGCAATCCCGAAACCACCACGGGC
GGCAACGCCCTCAAGTTTTATGCATCGGTGCGCCTCGACATCCGCCGCATTCAGACCCTCAAGCGGGGCACCGAGGAGTA
CGGCATCCGCGCCAAGGTGAAGGTGGCCAAGAACAAGGTGGCGCCTCCCTTCCGCATTGCTGAGTTCGACATCCTGTTTG
GCCGCGGCATCAGCACCCTGGGCTGCCTGCTGGATCTGGCCGAGGAAACCGGTGTGGTGGTCCGCAAGGGTGCCTGGTAC
AGCTACGAGGGTGACAACATTGGCCAGGGCCGCGACAACACGATCATCTGGCTGGAGCAGAACCCCAAGCAGGCTGAGCT
GATCGAGCAGCTCACCCGCCAGAAGCTTAAGGAAGGCTCCGAAGTGACATCTAACTCGATGAAGCCCCTGGCGGCAGCGG
CCAAAGCAGCTGCCGCCACTGGCTCCGTAAAGGAGGATCCGGCGACGGAGCTGGCCGATCTGCCGGTGGCGAGCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(38-298)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

61.473

88.693

0.545
  recA Ralstonia pseudosolanacearum GMI1000

63.444

83.166

0.528
  recA Acinetobacter baumannii D1279779

64.907

80.905

0.525
  recA Glaesserella parasuis strain SC1401

58.38

89.95

0.525
  recA Pseudomonas stutzeri DSM 10701

63.665

80.905

0.515
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.184

86.181

0.51
  recA Vibrio cholerae strain A1552

59.184

86.181

0.51
  recA Streptococcus mitis NCTC 12261

53.951

92.211

0.497
  recA Helicobacter pylori strain NCTC11637

58.284

84.925

0.495
  recA Helicobacter pylori 26695

58.284

84.925

0.495
  recA Bacillus subtilis subsp. subtilis str. 168

61.18

80.905

0.495
  recA Neisseria gonorrhoeae strain FA1090

59.337

83.417

0.495
  recA Neisseria gonorrhoeae MS11

59.337

83.417

0.495
  recA Neisseria gonorrhoeae MS11

59.337

83.417

0.495
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.091

82.915

0.49
  recA Latilactobacillus sakei subsp. sakei 23K

59.327

82.161

0.487
  recA Streptococcus pneumoniae Rx1

56.891

85.678

0.487
  recA Streptococcus pneumoniae D39

56.891

85.678

0.487
  recA Streptococcus pneumoniae R6

56.891

85.678

0.487
  recA Streptococcus pneumoniae TIGR4

56.891

85.678

0.487
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.952

79.146

0.482
  recA Lactococcus lactis subsp. cremoris KW2

56.845

84.422

0.48
  recA Streptococcus mitis SK321

57.846

81.658

0.472
  recA Streptococcus mutans UA159

57.538

81.658

0.47
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.748

81.91

0.465
  recA Streptococcus pyogenes NZ131

55.963

82.161

0.46