Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   H7F36_RS05035 Genome accession   NZ_CP060296
Coordinates   1070492..1071610 (-) Length   372 a.a.
NCBI ID   WP_187053646.1    Uniprot ID   A0A7G8W2K5
Organism   Variovorax sp. PAMC28562     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1065492..1076610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7F36_RS05010 (H7F36_05010) sucD 1066043..1066936 (-) 894 WP_187053641.1 succinate--CoA ligase subunit alpha -
  H7F36_RS05015 (H7F36_05015) sucC 1066946..1068112 (-) 1167 WP_187053642.1 ADP-forming succinate--CoA ligase subunit beta -
  H7F36_RS05020 (H7F36_05020) argC 1068294..1069217 (+) 924 WP_187053643.1 N-acetyl-gamma-glutamyl-phosphate reductase -
  H7F36_RS05025 (H7F36_05025) - 1069244..1069966 (-) 723 WP_187053644.1 hypothetical protein -
  H7F36_RS05030 (H7F36_05030) recX 1070013..1070462 (-) 450 WP_187053645.1 recombination regulator RecX -
  H7F36_RS05035 (H7F36_05035) recA 1070492..1071610 (-) 1119 WP_187053646.1 recombinase RecA Machinery gene
  H7F36_RS05040 (H7F36_05040) - 1071756..1072229 (+) 474 WP_187053647.1 MarR family winged helix-turn-helix transcriptional regulator -
  H7F36_RS05045 (H7F36_05045) - 1072257..1072931 (+) 675 WP_187053648.1 response regulator transcription factor -
  H7F36_RS05050 (H7F36_05050) - 1072928..1074367 (+) 1440 WP_187053649.1 sensor histidine kinase -
  H7F36_RS05055 (H7F36_05055) - 1074373..1074579 (-) 207 WP_187053650.1 sporulation protein -
  H7F36_RS05060 (H7F36_05060) - 1074585..1075397 (-) 813 WP_187053651.1 biotin--[acetyl-CoA-carboxylase] ligase -
  H7F36_RS05065 (H7F36_05065) - 1075402..1075995 (-) 594 WP_187053652.1 SET domain-containing protein -

Sequence

Protein


Download         Length: 372 a.a.        Molecular weight: 39828.81 Da        Isoelectric Point: 5.4121

>NTDB_id=475536 H7F36_RS05035 WP_187053646.1 1070492..1071610(-) (recA) [Variovorax sp. PAMC28562]
MDALVKGTSISVAGSEKAKALQAALAQIEKQFGKGTIMRLGEGEALEDVQVVSTGSLGLDIALGVGGLPRGRVIEIYGPE
SSGKTTLTLQVIAEMQKQSGTCAFVDAEHALDVQYAQKLGVNLSDLLISQPDTGEQALEIVDSLVRSGAVDLIVIDSVAA
LTPRAEIEGDMGDSLPGLQARLMSQALRKLTASIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRI
GTIKKGEEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIIDMGVTAKIVDKSGAWYAYNGEKIGQGRDNAREF
LRENPTLSREIENKVRESLGIPVLAELVEAKPVKAPKAEKAEKAEKSEQADK

Nucleotide


Download         Length: 1119 bp        

>NTDB_id=475536 H7F36_RS05035 WP_187053646.1 1070492..1071610(-) (recA) [Variovorax sp. PAMC28562]
ATGGACGCACTCGTCAAAGGCACCAGCATTTCGGTTGCAGGCAGCGAAAAGGCCAAGGCACTGCAGGCTGCTCTCGCTCA
AATCGAGAAGCAGTTCGGCAAGGGCACGATCATGCGGCTCGGTGAAGGCGAGGCGCTGGAAGACGTCCAGGTTGTGTCGA
CCGGCTCGCTCGGCCTTGACATCGCGTTGGGCGTCGGCGGCTTGCCGCGCGGCCGGGTCATCGAAATTTACGGACCGGAA
TCCTCGGGCAAGACCACGCTCACGCTTCAGGTCATCGCCGAAATGCAAAAGCAGTCAGGCACCTGCGCCTTCGTCGACGC
CGAACACGCGCTCGACGTGCAGTACGCGCAAAAGCTGGGCGTGAACCTGTCCGACCTGCTGATCAGCCAGCCCGACACCG
GCGAGCAGGCGCTCGAAATCGTCGATTCACTGGTGCGTTCAGGTGCCGTCGATTTGATCGTGATCGACTCGGTCGCCGCG
CTCACCCCGCGTGCCGAAATCGAAGGCGACATGGGCGACTCGTTGCCCGGTCTCCAGGCCCGCCTGATGAGCCAGGCGCT
GCGCAAGCTGACCGCCAGCATCAAGAAGACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGA
TGTTCGGCTCGCCCGAAACCACCACCGGCGGCAACGCGCTCAAGTTCTACGCGTCGGTCCGGCTCGACATTCGTCGCATC
GGCACCATCAAGAAGGGCGAAGAAGCGATCGGCAACGAGACCAAGGTCAAGGTCGTCAAGAACAAGGTCAGCCCGCCTTT
CAAGACGGCGGAGTTCGACATCCTGTTCGGCGAGGGCATCAGCCGCGAAGGCGAAATCATCGACATGGGCGTGACCGCCA
AGATCGTCGACAAGTCGGGCGCCTGGTACGCCTACAACGGCGAAAAAATTGGTCAGGGCCGCGACAACGCACGCGAGTTC
CTGCGCGAGAACCCGACGCTGTCACGCGAGATCGAGAACAAGGTGCGCGAATCGCTGGGCATCCCTGTCCTGGCCGAGCT
GGTAGAAGCCAAGCCGGTGAAGGCGCCCAAGGCTGAAAAGGCCGAGAAGGCCGAAAAATCCGAGCAAGCCGACAAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(19-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G8W2K5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

80.428

87.903

0.707
  recA Neisseria gonorrhoeae MS11

71.779

87.634

0.629
  recA Neisseria gonorrhoeae MS11

71.779

87.634

0.629
  recA Neisseria gonorrhoeae strain FA1090

71.779

87.634

0.629
  recA Acinetobacter baylyi ADP1

71.827

86.828

0.624
  recA Acinetobacter baumannii D1279779

71.207

86.828

0.618
  recA Pseudomonas stutzeri DSM 10701

71.207

86.828

0.618
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.976

89.247

0.616
  recA Vibrio cholerae strain A1552

68.976

89.247

0.616
  recA Glaesserella parasuis strain SC1401

70.37

87.097

0.613
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.405

87.634

0.599
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.985

90.591

0.589
  recA Helicobacter pylori strain NCTC11637

65.951

87.634

0.578
  recA Helicobacter pylori 26695

65.951

87.634

0.578
  recA Streptococcus mutans UA159

58.953

97.581

0.575
  recA Bacillus subtilis subsp. subtilis str. 168

64.832

87.903

0.57
  recA Streptococcus mitis NCTC 12261

59.429

94.086

0.559
  recA Streptococcus pyogenes NZ131

62.538

88.978

0.556
  recA Latilactobacillus sakei subsp. sakei 23K

61.791

90.054

0.556
  recA Streptococcus mitis SK321

60.526

91.935

0.556
  recA Streptococcus pneumoniae D39

61.747

89.247

0.551
  recA Streptococcus pneumoniae Rx1

61.747

89.247

0.551
  recA Streptococcus pneumoniae R6

61.747

89.247

0.551
  recA Streptococcus pneumoniae TIGR4

61.747

89.247

0.551
  recA Lactococcus lactis subsp. cremoris KW2

61.145

89.247

0.546
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.682

86.29

0.532