Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   H7F35_RS11090 Genome accession   NZ_CP060295
Coordinates   2291444..2292556 (-) Length   370 a.a.
NCBI ID   WP_187112910.1    Uniprot ID   A0A7G8VPY7
Organism   Variovorax sp. PAMC26660     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2286444..2297556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7F35_RS11060 (H7F35_11060) - 2286839..2287495 (+) 657 WP_410010773.1 amino acid ABC transporter permease -
  H7F35_RS11065 (H7F35_11065) - 2287479..2288207 (+) 729 WP_187112905.1 amino acid ABC transporter ATP-binding protein -
  H7F35_RS11070 (H7F35_11070) - 2288246..2289067 (+) 822 WP_187112906.1 transporter substrate-binding domain-containing protein -
  H7F35_RS11075 (H7F35_11075) - 2289073..2290182 (+) 1110 WP_187112907.1 mandelate racemase/muconate lactonizing enzyme family protein -
  H7F35_RS11080 (H7F35_11080) - 2290522..2290950 (-) 429 WP_187112908.1 SRPBCC family protein -
  H7F35_RS11085 (H7F35_11085) recX 2290934..2291392 (-) 459 WP_187112909.1 recombination regulator RecX -
  H7F35_RS11090 (H7F35_11090) recA 2291444..2292556 (-) 1113 WP_187112910.1 recombinase RecA Machinery gene
  H7F35_RS11095 (H7F35_11095) - 2292703..2293188 (+) 486 WP_187112911.1 MarR family winged helix-turn-helix transcriptional regulator -
  H7F35_RS11100 (H7F35_11100) - 2293253..2293927 (+) 675 WP_093242554.1 response regulator transcription factor -
  H7F35_RS11105 (H7F35_11105) - 2294046..2295491 (+) 1446 WP_187112912.1 sensor histidine kinase -
  H7F35_RS11110 (H7F35_11110) - 2295558..2295755 (-) 198 WP_187112913.1 sporulation protein -
  H7F35_RS11115 (H7F35_11115) - 2295761..2296579 (-) 819 WP_187112914.1 biotin--[acetyl-CoA-carboxylase] ligase -
  H7F35_RS11120 (H7F35_11120) - 2296582..2297223 (-) 642 WP_187112915.1 SET domain-containing protein -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39380.24 Da        Isoelectric Point: 5.1028

>NTDB_id=475523 H7F35_RS11090 WP_187112910.1 2291444..2292556(-) (recA) [Variovorax sp. PAMC26660]
MDAVVKGASISVANSEKAKALQAALAQIEKQFGKGTIMRLGEGEALEDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPE
SSGKTTLTLQVIAEMQKQAGTCAFVDAEHALDVQYAQKLGVNLSDLLISQPDTGEQALEIVDSLVRSGAVDLIVIDSVAA
LTPKAEIEGEMGDSLPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRI
GTIKKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIIDMGVTAKIVDKSGAWYAYNGEKIGQGRDNAREF
LRENPELSREIENKVRESLGIPLLAADAGAEPEKAEKPAKAPKADKAAAE

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=475523 H7F35_RS11090 WP_187112910.1 2291444..2292556(-) (recA) [Variovorax sp. PAMC26660]
ATGGACGCAGTCGTCAAGGGCGCAAGCATCTCGGTCGCCAACAGTGAAAAGGCCAAGGCCCTGCAGGCCGCGCTGGCCCA
GATCGAAAAGCAGTTCGGCAAGGGCACGATCATGCGGCTGGGCGAAGGTGAAGCGCTCGAAGACATCCAGGTGGTCTCCA
CCGGCTCGCTGGGCCTGGACATCGCCCTGGGCGTCGGCGGCCTGCCGCGCGGCCGTGTGATCGAAATCTACGGCCCGGAA
TCCTCGGGCAAGACCACGCTCACGCTGCAGGTCATCGCCGAAATGCAAAAGCAGGCCGGCACCTGCGCTTTCGTCGACGC
CGAACATGCGCTCGACGTGCAGTACGCCCAGAAGCTCGGCGTGAACCTGTCCGACCTGCTGATCAGCCAGCCCGACACCG
GCGAGCAGGCGCTCGAAATCGTCGACTCGCTGGTGCGCTCGGGCGCCGTCGACCTGATCGTCATCGACTCGGTCGCCGCG
CTCACGCCCAAGGCCGAAATCGAAGGCGAAATGGGCGACTCGCTGCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCT
GCGCAAGCTCACGGCCACGATCAAGAAGACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGA
TGTTCGGCTCGCCCGAAACCACCACCGGCGGCAATGCGCTGAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGCATC
GGCACCATCAAGAAGGGCGACGAAGCCATCGGCAACGAAACCAAGGTGAAGGTGGTGAAGAACAAGGTCAGCCCTCCGTT
CAAGACGGCGGAGTTCGACATCCTGTTCGGCGAGGGCATCAGCCGCGAAGGCGAAATCATCGACATGGGCGTCACCGCCA
AGATCGTCGACAAGTCGGGCGCCTGGTACGCCTACAACGGCGAAAAAATCGGCCAGGGCCGCGACAACGCCCGTGAGTTC
CTGCGCGAGAACCCCGAGCTGTCGCGCGAGATCGAGAACAAGGTGCGCGAGTCGCTGGGCATTCCGCTGCTGGCCGCCGA
TGCCGGTGCAGAGCCCGAAAAGGCCGAGAAGCCCGCCAAGGCGCCGAAGGCCGACAAGGCAGCGGCAGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(19-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G8VPY7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

81.503

93.514

0.762
  recA Acinetobacter baylyi ADP1

68.986

93.243

0.643
  recA Neisseria gonorrhoeae strain FA1090

68.406

93.243

0.638
  recA Neisseria gonorrhoeae MS11

68.406

93.243

0.638
  recA Neisseria gonorrhoeae MS11

68.406

93.243

0.638
  recA Pseudomonas stutzeri DSM 10701

72.086

88.108

0.635
  recA Acinetobacter baumannii D1279779

71.166

88.108

0.627
  recA Glaesserella parasuis strain SC1401

71.296

87.568

0.624
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.605

88.919

0.619
  recA Vibrio cholerae strain A1552

69.605

88.919

0.619
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.797

93.243

0.614
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.465

89.459

0.595
  recA Helicobacter pylori 26695

65.549

88.649

0.581
  recA Helicobacter pylori strain NCTC11637

65.549

88.649

0.581
  recA Bacillus subtilis subsp. subtilis str. 168

65.138

88.378

0.576
  recA Streptococcus mutans UA159

59.155

95.946

0.568
  recA Streptococcus mitis SK321

59.538

93.514

0.557
  recA Latilactobacillus sakei subsp. sakei 23K

62.424

89.189

0.557
  recA Streptococcus pyogenes NZ131

61.702

88.919

0.549
  recA Lactococcus lactis subsp. cremoris KW2

61.329

89.459

0.549
  recA Streptococcus pneumoniae Rx1

61.027

89.459

0.546
  recA Streptococcus pneumoniae D39

61.027

89.459

0.546
  recA Streptococcus pneumoniae R6

61.027

89.459

0.546
  recA Streptococcus pneumoniae TIGR4

61.027

89.459

0.546
  recA Streptococcus mitis NCTC 12261

60.725

89.459

0.543
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.059

86.757

0.53