Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   H7F31_RS19505 Genome accession   NZ_CP060293
Coordinates   4869568..4870623 (+) Length   351 a.a.
NCBI ID   WP_187100128.1    Uniprot ID   -
Organism   Paenibacillus sp. PAMC21692     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4864568..4875623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7F31_RS19485 (H7F31_19485) - 4865292..4866221 (+) 930 WP_187100126.1 RodZ family helix-turn-helix domain-containing protein -
  H7F31_RS19490 (H7F31_19490) - 4866294..4866785 (+) 492 WP_087570902.1 YajQ family cyclic di-GMP-binding protein -
  H7F31_RS19495 (H7F31_19495) pgsA 4867165..4867740 (+) 576 WP_087570901.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  H7F31_RS19500 (H7F31_19500) - 4868015..4869268 (+) 1254 WP_187100127.1 competence/damage-inducible protein A -
  H7F31_RS19505 (H7F31_19505) recA 4869568..4870623 (+) 1056 WP_187100128.1 recombinase RecA Machinery gene
  H7F31_RS19510 (H7F31_19510) - 4870756..4871448 (+) 693 WP_261800055.1 RecX family transcriptional regulator -
  H7F31_RS19515 (H7F31_19515) rny 4871631..4873175 (+) 1545 WP_108994339.1 ribonuclease Y -
  H7F31_RS19520 (H7F31_19520) - 4873251..4874045 (+) 795 WP_187100129.1 TIGR00282 family metallophosphoesterase -
  H7F31_RS19525 (H7F31_19525) - 4874182..4874442 (+) 261 WP_006036664.1 stage V sporulation protein S -
  H7F31_RS19530 (H7F31_19530) - 4874665..4875621 (+) 957 WP_397374722.1 dipeptidase -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 37976.07 Da        Isoelectric Point: 4.7740

>NTDB_id=475509 H7F31_RS19505 WP_187100128.1 4869568..4870623(+) (recA) [Paenibacillus sp. PAMC21692]
MADRRAALDNALRQIEKQFGKGSIMKLGESTHMQVETVPSGSLALDIALGIGGLPRGRVIEVYGPESSGKTTVALHAIAE
VQRIGGQAAFIDAEHALDPLYASKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAISKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDVRRIETLKQGNDMVGNRT
RIKVVKNKVAPPFKQAEIDIMYGEGISKEGSLVDIGVEMDIVQKSGAWFSYNGERLGQGRENAKQFLKEKTDIANEIERQ
IREASNLSANASQANFSADEDEDEDELEFDV

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=475509 H7F31_RS19505 WP_187100128.1 4869568..4870623(+) (recA) [Paenibacillus sp. PAMC21692]
TTGGCGGATCGTCGCGCAGCTTTGGATAATGCTCTTCGTCAGATCGAGAAGCAATTTGGCAAAGGCTCCATTATGAAATT
AGGGGAATCGACTCATATGCAAGTAGAGACCGTGCCGAGCGGCTCGCTTGCCTTAGATATTGCACTTGGAATCGGCGGCT
TGCCGCGTGGCCGGGTTATCGAAGTATACGGTCCGGAATCATCCGGTAAAACGACAGTAGCGCTTCACGCAATTGCGGAA
GTACAACGTATTGGCGGACAAGCCGCGTTTATCGACGCGGAGCACGCGCTGGATCCGCTGTATGCCAGCAAGCTTGGCGT
TAACATCGACGAGCTGCTGCTGTCCCAGCCGGATACGGGCGAGCAGGCGCTGGAGATCGCGGAGGCGCTCGTGCGCAGCG
GCGCCGTTGACATTATCGTTATAGACTCCGTGGCGGCATTGGTGCCGAAGGCGGAGATCGAGGGCGACATGGGCGACTCT
CACGTTGGTCTTCAGGCTCGTCTTATGTCGCAGGCTCTGCGTAAGCTGTCCGGAGCCATTTCGAAGTCCAAGACGATCGC
AATCTTCATCAACCAGCTTCGCGAGAAGGTTGGCGTTATGTTCGGCAACCCGGAGACGACGCCAGGCGGACGCGCATTGA
AGTTCTACTCCAGCGTTCGGCTTGACGTTCGCCGTATCGAGACGCTGAAGCAGGGCAATGACATGGTGGGCAACCGGACT
CGCATCAAGGTTGTAAAAAACAAGGTAGCGCCTCCGTTCAAGCAAGCGGAGATCGATATTATGTACGGCGAAGGCATCTC
CAAGGAAGGCAGCTTGGTTGACATCGGTGTAGAGATGGATATCGTTCAGAAGAGCGGCGCCTGGTTCTCTTATAACGGCG
AGCGTCTCGGTCAAGGCCGCGAGAACGCCAAGCAATTCCTGAAGGAGAAGACCGACATTGCAAACGAGATCGAGAGACAG
ATTCGTGAAGCCAGCAACCTGTCGGCTAATGCGTCTCAAGCGAACTTCTCGGCTGACGAGGACGAGGACGAAGACGAGTT
GGAATTTGACGTATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

83.636

94.017

0.786
  recA Latilactobacillus sakei subsp. sakei 23K

71.176

96.866

0.689
  recA Streptococcus pyogenes NZ131

65.722

100

0.661
  recA Streptococcus mutans UA159

64.067

100

0.655
  recA Streptococcus pneumoniae Rx1

69.231

92.593

0.641
  recA Streptococcus pneumoniae D39

69.231

92.593

0.641
  recA Streptococcus pneumoniae R6

69.231

92.593

0.641
  recA Streptococcus pneumoniae TIGR4

69.231

92.593

0.641
  recA Lactococcus lactis subsp. cremoris KW2

67.879

94.017

0.638
  recA Streptococcus mitis NCTC 12261

68.923

92.593

0.638
  recA Streptococcus mitis SK321

68.615

92.593

0.635
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.536

98.86

0.618
  recA Vibrio cholerae strain A1552

62.536

98.86

0.618
  recA Glaesserella parasuis strain SC1401

61.823

100

0.618
  recA Acinetobacter baumannii D1279779

62.319

98.291

0.613
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.029

98.291

0.61
  recA Acinetobacter baylyi ADP1

62.029

98.291

0.61
  recA Neisseria gonorrhoeae MS11

63.253

94.587

0.598
  recA Neisseria gonorrhoeae MS11

63.253

94.587

0.598
  recA Neisseria gonorrhoeae strain FA1090

63.253

94.587

0.598
  recA Ralstonia pseudosolanacearum GMI1000

67.961

88.034

0.598
  recA Pseudomonas stutzeri DSM 10701

60.35

97.721

0.59
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.691

93.162

0.584
  recA Helicobacter pylori 26695

62.539

92.023

0.576
  recA Helicobacter pylori strain NCTC11637

62.539

92.023

0.576
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.3

92.023

0.564