Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   H7683_RS01235 Genome accession   NZ_CP060288
Coordinates   262757..263800 (-) Length   347 a.a.
NCBI ID   WP_013716389.1    Uniprot ID   A0A379ISU7
Organism   Pseudomonas mendocina strain CPS5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 257757..268800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7683_RS01210 (H7683_01210) rmf 259616..259831 (+) 216 WP_003244273.1 ribosome modulation factor -
  H7683_RS01215 (H7683_01215) - 259913..260935 (-) 1023 WP_013716385.1 quinone-dependent dihydroorotate dehydrogenase -
  H7683_RS01220 (H7683_01220) - 261023..261244 (-) 222 WP_013716386.1 DUF2835 domain-containing protein -
  H7683_RS01225 (H7683_01225) - 261389..262279 (+) 891 WP_209450146.1 DUF6685 family protein -
  H7683_RS01230 (H7683_01230) recX 262284..262745 (-) 462 WP_115291145.1 recombination regulator RecX -
  H7683_RS01235 (H7683_01235) recA 262757..263800 (-) 1044 WP_013716389.1 recombinase RecA Machinery gene
  H7683_RS01240 (H7683_01240) - 263888..264388 (-) 501 WP_209450147.1 CinA family protein -
  H7683_RS01245 (H7683_01245) mutS 264569..267136 (+) 2568 WP_209450148.1 DNA mismatch repair protein MutS -
  H7683_RS01250 (H7683_01250) fdxA 267272..267595 (+) 324 WP_013716392.1 ferredoxin FdxA -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37212.60 Da        Isoelectric Point: 5.3157

>NTDB_id=475363 H7683_RS01235 WP_013716389.1 262757..263800(-) (recA) [Pseudomonas mendocina strain CPS5]
MDENKKRALAAALGQIEKQFGKGAVMRMGDHERQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
EAQKLGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGAVKEGEEVVGSE
TRVKIVKNKVAPPFRQAEFQILYGKGIYRNGEIIDLGVQQGLVEKSGAWYSYQGNKIGQGKANAAKFLEDNQEVAREIEG
QIRQKLLVNSTPAKASADDLADAEVDF

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=475363 H7683_RS01235 WP_013716389.1 262757..263800(-) (recA) [Pseudomonas mendocina strain CPS5]
ATGGACGAGAACAAGAAGCGCGCTTTGGCGGCTGCCCTGGGTCAGATCGAGAAGCAGTTCGGCAAGGGCGCAGTCATGCG
CATGGGCGATCATGAGCGCCAGGCGATTCCGGCCATTTCCACCGGTTCGCTGGGCCTGGACATCGCACTGGGCATTGGGG
GCCTGCCGAAGGGTCGTATCGTTGAAATTTACGGTCCGGAGTCTTCGGGTAAGACCACTTTGACCCTGTCGGTGATCGCT
GAGGCGCAGAAACTCGGTGCCACCTGCGCCTTCGTCGATGCCGAGCATGCGCTCGATCCCGACTACGCCGGCAAGCTCGG
CGTCAATGTCGACGACCTGCTGGTGTCGCAGCCAGACACCGGTGAGCAGGCCCTGGAAATCACCGACATGCTGGTGCGTT
CCAACGCTATCGACGTGATCATCGTCGACTCCGTGGCGGCCCTGGTGCCCAAGGCGGAAATCGAAGGTGAGATGGGCGAC
ATGCACGTCGGCCTACAGGCTCGACTGATGAGTCAGGCGCTGCGCAAGATCACCGGCAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGTATGAAGATCGGCGTGATGTTCGGCAGCCCTGAAACCACCACCGGCGGTAACGCAC
TGAAATTCTACTCCTCGGTTCGCCTGGACATCCGTCGTACTGGCGCGGTGAAGGAAGGCGAAGAAGTGGTGGGTAGCGAA
ACCCGCGTGAAGATCGTCAAGAACAAGGTCGCCCCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTGTACGGCAAGGGCAT
CTATCGTAACGGCGAGATCATCGATCTTGGCGTGCAACAGGGTCTGGTCGAGAAGTCGGGTGCCTGGTATAGCTATCAGG
GCAACAAGATCGGCCAAGGCAAGGCCAATGCCGCCAAGTTCCTGGAAGACAATCAGGAAGTGGCCCGCGAGATCGAAGGT
CAGATTCGCCAGAAGTTGCTGGTGAACAGTACTCCGGCCAAGGCTTCCGCCGACGACCTGGCTGACGCAGAAGTCGACTT
CTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A379ISU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

90.778

100

0.908
  recA Acinetobacter baylyi ADP1

74.336

97.695

0.726
  recA Acinetobacter baumannii D1279779

74.336

97.695

0.726
  recA Vibrio cholerae strain A1552

74.006

94.236

0.697
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.006

94.236

0.697
  recA Glaesserella parasuis strain SC1401

70.674

98.271

0.695
  recA Ralstonia pseudosolanacearum GMI1000

72.171

94.236

0.68
  recA Neisseria gonorrhoeae MS11

71.914

93.372

0.671
  recA Neisseria gonorrhoeae MS11

71.914

93.372

0.671
  recA Neisseria gonorrhoeae strain FA1090

71.914

93.372

0.671
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.526

94.236

0.608
  recA Helicobacter pylori strain NCTC11637

63.636

95.101

0.605
  recA Helicobacter pylori 26695

63.03

95.101

0.599
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.677

96.254

0.594
  recA Bacillus subtilis subsp. subtilis str. 168

62.617

92.507

0.579
  recA Streptococcus mitis NCTC 12261

55.908

100

0.559
  recA Latilactobacillus sakei subsp. sakei 23K

58.485

95.101

0.556
  recA Streptococcus mitis SK321

56.471

97.983

0.553
  recA Streptococcus mutans UA159

59.077

93.66

0.553
  recA Streptococcus pneumoniae TIGR4

57.362

93.948

0.539
  recA Streptococcus pneumoniae Rx1

57.362

93.948

0.539
  recA Streptococcus pneumoniae D39

57.362

93.948

0.539
  recA Streptococcus pneumoniae R6

57.362

93.948

0.539
  recA Streptococcus pyogenes NZ131

57.012

94.524

0.539
  recA Lactococcus lactis subsp. cremoris KW2

56.656

93.084

0.527
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.763

92.507

0.516