Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | HCR03_RS15070 | Genome accession | NZ_CP060286 |
| Coordinates | 3032869..3033963 (-) | Length | 364 a.a. |
| NCBI ID | WP_187035173.1 | Uniprot ID | A0A7G8T8S2 |
| Organism | Caproicibacter fermentans strain 7D4C2 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 3030025..3042720 | 3032869..3033963 | within | 0 |
Gene organization within MGE regions
Location: 3030025..3042720
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HCR03_RS15055 (HCR03_15055) | - | 3030025..3031890 (+) | 1866 | WP_187035167.1 | MFS transporter | - |
| HCR03_RS15060 (HCR03_15060) | - | 3032093..3032332 (+) | 240 | WP_187035169.1 | hypothetical protein | - |
| HCR03_RS15065 (HCR03_15065) | - | 3032356..3032598 (+) | 243 | WP_187035171.1 | hypothetical protein | - |
| HCR03_RS15070 (HCR03_15070) | recA | 3032869..3033963 (-) | 1095 | WP_187035173.1 | recombinase RecA | Machinery gene |
| HCR03_RS15075 (HCR03_15075) | - | 3034007..3034633 (-) | 627 | WP_187035175.1 | pentapeptide repeat-containing protein | - |
| HCR03_RS15080 (HCR03_15080) | - | 3034661..3035149 (-) | 489 | WP_187035176.1 | hypothetical protein | - |
| HCR03_RS15085 (HCR03_15085) | - | 3035146..3035544 (-) | 399 | WP_187035178.1 | hypothetical protein | - |
| HCR03_RS15090 (HCR03_15090) | - | 3035541..3036065 (-) | 525 | WP_187035180.1 | CarD family transcriptional regulator | - |
| HCR03_RS15095 (HCR03_15095) | - | 3036075..3036338 (-) | 264 | WP_207727252.1 | hypothetical protein | - |
| HCR03_RS15100 (HCR03_15100) | uvrA | 3036349..3039216 (-) | 2868 | WP_187035182.1 | excinuclease ABC subunit UvrA | - |
| HCR03_RS15105 (HCR03_15105) | - | 3039558..3040070 (+) | 513 | WP_187035184.1 | DUF2798 domain-containing protein | - |
| HCR03_RS15110 (HCR03_15110) | - | 3040067..3041245 (+) | 1179 | WP_187035186.1 | MFS transporter | - |
| HCR03_RS15115 (HCR03_15115) | - | 3041837..3042286 (+) | 450 | WP_187035188.1 | sigma-70 family RNA polymerase sigma factor | - |
| HCR03_RS15120 (HCR03_15120) | - | 3042475..3042720 (+) | 246 | WP_187035190.1 | helix-turn-helix transcriptional regulator | - |
Sequence
Protein
Download Length: 364 a.a. Molecular weight: 39241.65 Da Isoelectric Point: 5.3193
>NTDB_id=475318 HCR03_RS15070 WP_187035173.1 3032869..3033963(-) (recA) [Caproicibacter fermentans strain 7D4C2]
MSSDRSPIPSAAPALDKKQAVEKAITQIERVYGKGSIMRLGDRTQLSVDVLPTGSIGLDLALGVGGVPRGRVVEIYGPES
SGKTTLALHIVAEAQKLGGEVAYIDAEHALDPSYAHALGVDTDNMLISQPDDGEQALEITDSLIRSGALSVVVIDSVAAL
VPRAEIEGDMGDSHMGLHARLMSQALRKLTGSISKTNCIAIFINQLREKIGVMYGNPETTTGGRALKFYSSVRLDIRRIE
PIKQGTEIIGNRTRVKVVKNKVAPPFRRAEFDIIYGEGISKAGELVDVGLALDLVQKSGSWFFMEETRLGQGREAAKQYF
QEHMDEARALEAEIVQKAQADPSALTSVTPKTTTNGPKDDFTDE
MSSDRSPIPSAAPALDKKQAVEKAITQIERVYGKGSIMRLGDRTQLSVDVLPTGSIGLDLALGVGGVPRGRVVEIYGPES
SGKTTLALHIVAEAQKLGGEVAYIDAEHALDPSYAHALGVDTDNMLISQPDDGEQALEITDSLIRSGALSVVVIDSVAAL
VPRAEIEGDMGDSHMGLHARLMSQALRKLTGSISKTNCIAIFINQLREKIGVMYGNPETTTGGRALKFYSSVRLDIRRIE
PIKQGTEIIGNRTRVKVVKNKVAPPFRRAEFDIIYGEGISKAGELVDVGLALDLVQKSGSWFFMEETRLGQGREAAKQYF
QEHMDEARALEAEIVQKAQADPSALTSVTPKTTTNGPKDDFTDE
Nucleotide
Download Length: 1095 bp
>NTDB_id=475318 HCR03_RS15070 WP_187035173.1 3032869..3033963(-) (recA) [Caproicibacter fermentans strain 7D4C2]
ATGTCATCAGATAGGAGTCCCATTCCGTCCGCCGCACCTGCCCTGGATAAAAAACAGGCAGTGGAGAAAGCAATCACGCA
AATCGAGCGTGTCTATGGGAAAGGCTCAATTATGCGTTTGGGAGATAGAACGCAGCTTTCAGTAGATGTCTTGCCGACCG
GCTCTATTGGGCTGGACTTGGCCTTGGGAGTCGGCGGCGTACCCAGGGGACGAGTTGTCGAGATATATGGCCCTGAATCT
TCCGGTAAAACAACTCTCGCTTTACATATCGTGGCCGAAGCGCAAAAGCTGGGCGGAGAGGTTGCCTATATCGATGCCGA
ACACGCGCTTGACCCAAGCTATGCCCACGCGCTGGGTGTGGATACGGATAATATGCTGATATCTCAGCCGGACGATGGGG
AGCAGGCGTTGGAGATTACCGACTCGTTGATCCGCTCCGGAGCGCTGTCTGTCGTCGTGATAGATTCGGTGGCCGCGCTT
GTTCCACGGGCCGAAATTGAGGGAGATATGGGCGACAGCCATATGGGACTCCACGCGCGGCTTATGAGTCAGGCACTGCG
AAAACTGACCGGCAGCATCTCAAAGACAAATTGCATTGCCATATTCATCAATCAACTACGCGAGAAGATCGGCGTCATGT
ATGGCAATCCCGAAACCACAACCGGCGGGCGCGCTCTAAAGTTCTATTCTTCCGTCCGGCTCGATATTCGGAGAATTGAG
CCAATTAAGCAAGGAACGGAAATCATCGGAAACCGCACTCGCGTTAAAGTGGTAAAAAACAAAGTTGCGCCGCCTTTTCG
CCGGGCTGAATTTGACATCATTTACGGCGAAGGGATTTCAAAAGCAGGTGAGCTAGTCGATGTCGGGCTGGCGCTTGATT
TAGTTCAAAAGTCCGGATCATGGTTCTTTATGGAAGAAACACGTTTAGGACAGGGCCGCGAAGCCGCAAAGCAGTATTTT
CAAGAGCACATGGACGAAGCGCGGGCGCTTGAAGCTGAGATCGTACAAAAAGCGCAAGCCGATCCTTCTGCATTAACCTC
GGTAACACCAAAAACCACCACAAATGGCCCAAAAGATGATTTTACAGATGAATAG
ATGTCATCAGATAGGAGTCCCATTCCGTCCGCCGCACCTGCCCTGGATAAAAAACAGGCAGTGGAGAAAGCAATCACGCA
AATCGAGCGTGTCTATGGGAAAGGCTCAATTATGCGTTTGGGAGATAGAACGCAGCTTTCAGTAGATGTCTTGCCGACCG
GCTCTATTGGGCTGGACTTGGCCTTGGGAGTCGGCGGCGTACCCAGGGGACGAGTTGTCGAGATATATGGCCCTGAATCT
TCCGGTAAAACAACTCTCGCTTTACATATCGTGGCCGAAGCGCAAAAGCTGGGCGGAGAGGTTGCCTATATCGATGCCGA
ACACGCGCTTGACCCAAGCTATGCCCACGCGCTGGGTGTGGATACGGATAATATGCTGATATCTCAGCCGGACGATGGGG
AGCAGGCGTTGGAGATTACCGACTCGTTGATCCGCTCCGGAGCGCTGTCTGTCGTCGTGATAGATTCGGTGGCCGCGCTT
GTTCCACGGGCCGAAATTGAGGGAGATATGGGCGACAGCCATATGGGACTCCACGCGCGGCTTATGAGTCAGGCACTGCG
AAAACTGACCGGCAGCATCTCAAAGACAAATTGCATTGCCATATTCATCAATCAACTACGCGAGAAGATCGGCGTCATGT
ATGGCAATCCCGAAACCACAACCGGCGGGCGCGCTCTAAAGTTCTATTCTTCCGTCCGGCTCGATATTCGGAGAATTGAG
CCAATTAAGCAAGGAACGGAAATCATCGGAAACCGCACTCGCGTTAAAGTGGTAAAAAACAAAGTTGCGCCGCCTTTTCG
CCGGGCTGAATTTGACATCATTTACGGCGAAGGGATTTCAAAAGCAGGTGAGCTAGTCGATGTCGGGCTGGCGCTTGATT
TAGTTCAAAAGTCCGGATCATGGTTCTTTATGGAAGAAACACGTTTAGGACAGGGCCGCGAAGCCGCAAAGCAGTATTTT
CAAGAGCACATGGACGAAGCGCGGGCGCTTGAAGCTGAGATCGTACAAAAAGCGCAAGCCGATCCTTCTGCATTAACCTC
GGTAACACCAAAAACCACCACAAATGGCCCAAAAGATGATTTTACAGATGAATAG
Similar proteins
Only experimentally validated proteins are listed.