Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HCR03_RS10620 Genome accession   NZ_CP060286
Coordinates   2156794..2157942 (-) Length   382 a.a.
NCBI ID   WP_083210284.1    Uniprot ID   A0A6N8I3E5
Organism   Caproicibacter fermentans strain 7D4C2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2151794..2162942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCR03_RS10595 (HCR03_10595) cysE 2152801..2153475 (-) 675 WP_187034202.1 serine O-acetyltransferase -
  HCR03_RS10600 (HCR03_10600) pgsA 2153806..2154408 (-) 603 WP_066650169.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  HCR03_RS10605 (HCR03_10605) rimO 2154421..2155749 (-) 1329 WP_187034203.1 30S ribosomal protein S12 methylthiotransferase RimO -
  HCR03_RS10610 (HCR03_10610) - 2155768..2156193 (-) 426 WP_207708897.1 pyridoxamine 5'-phosphate oxidase family protein -
  HCR03_RS10615 (HCR03_10615) - 2156147..2156797 (-) 651 WP_187034204.1 regulatory protein RecX -
  HCR03_RS10620 (HCR03_10620) recA 2156794..2157942 (-) 1149 WP_083210284.1 recombinase RecA Machinery gene
  HCR03_RS10625 (HCR03_10625) prmC 2158072..2158887 (-) 816 WP_228724943.1 peptide chain release factor N(5)-glutamine methyltransferase -
  HCR03_RS20125 - 2158884..2159327 (-) 444 WP_407926801.1 DUF1385 domain-containing protein -
  HCR03_RS20130 - 2159281..2159853 (-) 573 WP_267459176.1 DUF1385 domain-containing protein -
  HCR03_RS10635 (HCR03_10635) - 2159881..2161314 (-) 1434 WP_228724944.1 cell wall metabolism sensor histidine kinase WalK -
  HCR03_RS10640 (HCR03_10640) - 2161362..2162072 (-) 711 WP_066650149.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 40983.70 Da        Isoelectric Point: 5.6721

>NTDB_id=475316 HCR03_RS10620 WP_083210284.1 2156794..2157942(-) (recA) [Caproicibacter fermentans strain 7D4C2]
MAAGKKMPEKLVGKGTDKKKALETALAQIEKQYGKGAVMRLGQNEAMHVEAIPTGSLGLDLALGIGGLPRGRIIEIYGPE
SSGKTTLALHCIAQGQKNGGNAAFIDVEHALDPVYARALGVDVDSLLVSQPDTGEQALEITEALVRSGAIDVIVVDSVAA
LVPRVEIEGEMGDSHVGLQARLMSQALRKLAGAISKSNCVAIFINQLREKVGVMYGNPEVTPGGRALKFYASVRIDIRKV
ETLKNGTEMIGSHTRAKVVKNKIAPPFRSAEFDVMYGQGISHDGELLDLGVQLDLVQKSGAWFSYQDIRIGQGRENAKNF
FAEHPDTAEELEKQIRQHMTELFNKPTPGSKIHPVETAVKEEDAGNGKAGANSDIDIEADDE

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=475316 HCR03_RS10620 WP_083210284.1 2156794..2157942(-) (recA) [Caproicibacter fermentans strain 7D4C2]
ATGGCGGCGGGAAAAAAGATGCCGGAAAAGCTGGTCGGCAAGGGAACCGATAAAAAGAAGGCGCTGGAAACGGCGCTGGC
GCAGATCGAAAAGCAGTACGGCAAAGGGGCGGTCATGCGCCTGGGACAGAACGAGGCCATGCATGTCGAGGCGATTCCGA
CCGGCTCGCTCGGGCTTGACCTGGCGCTTGGAATCGGCGGCCTGCCGCGCGGCAGGATCATAGAAATCTATGGGCCGGAA
AGCTCCGGCAAAACCACGCTGGCGCTGCACTGCATCGCGCAGGGGCAGAAAAACGGCGGAAACGCCGCGTTCATCGACGT
GGAACACGCACTGGACCCGGTTTACGCGCGCGCGCTCGGCGTGGATGTGGATTCCCTGCTGGTCTCTCAGCCGGACACCG
GCGAGCAGGCGCTGGAAATCACGGAGGCTTTGGTGCGCTCCGGCGCGATCGACGTTATCGTGGTGGATTCGGTGGCGGCG
CTGGTACCGCGGGTGGAAATCGAGGGCGAAATGGGCGACAGCCACGTCGGCCTGCAGGCCCGCCTGATGTCCCAGGCCCT
TCGCAAGCTGGCGGGCGCGATTTCCAAATCAAACTGCGTGGCGATCTTTATCAATCAGCTGCGCGAGAAAGTCGGCGTGA
TGTACGGCAACCCCGAGGTGACCCCGGGCGGCAGAGCGCTGAAATTCTACGCTTCCGTCAGAATCGATATCCGCAAGGTC
GAAACCTTGAAAAACGGAACGGAAATGATCGGTTCGCATACGAGGGCGAAGGTGGTCAAGAACAAGATTGCGCCGCCGTT
CCGCTCCGCGGAGTTCGACGTGATGTACGGACAGGGGATTTCGCACGACGGAGAGCTGCTGGACCTCGGCGTTCAGCTTG
ACCTTGTGCAGAAAAGCGGCGCGTGGTTTTCCTATCAGGACATCAGAATCGGGCAGGGGCGCGAAAACGCGAAAAACTTT
TTTGCGGAACATCCGGATACGGCGGAAGAACTGGAGAAACAGATTCGGCAGCATATGACGGAGCTGTTTAATAAGCCGAC
GCCCGGATCGAAAATTCATCCCGTGGAAACCGCCGTCAAGGAAGAGGACGCCGGAAACGGGAAAGCGGGCGCCAATTCCG
ATATTGACATTGAGGCGGACGACGAATGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(20-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N8I3E5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

68.111

84.555

0.576
  recA Streptococcus pneumoniae R6

58.76

97.12

0.571
  recA Streptococcus pneumoniae Rx1

58.76

97.12

0.571
  recA Streptococcus pneumoniae D39

58.76

97.12

0.571
  recA Streptococcus pneumoniae TIGR4

58.76

97.12

0.571
  recA Pseudomonas stutzeri DSM 10701

64.97

87.435

0.568
  recA Acinetobacter baumannii D1279779

66.873

84.555

0.565
  recA Glaesserella parasuis strain SC1401

66.46

84.293

0.56
  recA Acinetobacter baylyi ADP1

66.254

84.555

0.56
  recA Neisseria gonorrhoeae strain FA1090

62.281

89.529

0.558
  recA Neisseria gonorrhoeae MS11

62.281

89.529

0.558
  recA Neisseria gonorrhoeae MS11

62.281

89.529

0.558
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.123

84.817

0.552
  recA Latilactobacillus sakei subsp. sakei 23K

65.625

83.77

0.55
  recA Vibrio cholerae strain A1552

65.015

84.555

0.55
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.015

84.555

0.55
  recA Helicobacter pylori strain NCTC11637

64.506

84.817

0.547
  recA Streptococcus pyogenes NZ131

61.29

89.267

0.547
  recA Helicobacter pylori 26695

64.198

84.817

0.545
  recA Streptococcus mitis SK321

60.767

88.743

0.539
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.31

86.126

0.537
  recA Streptococcus mutans UA159

59.824

89.267

0.534
  recA Streptococcus mitis NCTC 12261

60.714

87.958

0.534
  recA Lactococcus lactis subsp. cremoris KW2

61.043

85.34

0.521
  recA Ralstonia pseudosolanacearum GMI1000

63.666

81.414

0.518
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.111

84.817

0.518