Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DMSX03_RS07905 Genome accession   NZ_CP060271
Coordinates   1668905..1669954 (-) Length   349 a.a.
NCBI ID   WP_029377444.1    Uniprot ID   -
Organism   Staphylococcus xylosus strain DMSX03     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1663905..1674954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DMSX03_RS07890 - 1665492..1666280 (-) 789 WP_017724325.1 TIGR00282 family metallophosphoesterase -
  DMSX03_RS07895 - 1666447..1666662 (+) 216 WP_029377442.1 hypothetical protein -
  DMSX03_RS07900 rny 1666864..1668423 (-) 1560 WP_029377443.1 ribonuclease Y -
  DMSX03_RS07905 recA 1668905..1669954 (-) 1050 WP_029377444.1 recombinase RecA Machinery gene
  DMSX03_RS07910 - 1670128..1671270 (-) 1143 WP_029377445.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  DMSX03_RS07915 pgsA 1671473..1672051 (-) 579 WP_029377446.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  DMSX03_RS07920 - 1672103..1672495 (-) 393 WP_029377447.1 RodZ family helix-turn-helix domain-containing protein -
  DMSX03_RS07925 - 1672526..1673356 (-) 831 WP_029377448.1 YmfK family protein -
  DMSX03_RS07930 ymfI 1673542..1674246 (-) 705 WP_186335274.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37689.63 Da        Isoelectric Point: 5.0032

>NTDB_id=475109 DMSX03_RS07905 WP_029377444.1 1668905..1669954(-) (recA) [Staphylococcus xylosus strain DMSX03]
MDNDRQKALDTVIKNMEKSFGKGAVMKLGDNEARKVSSVSSGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQRNGGVAAFIDAEHALDPVYAEALGVDIQNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAVFINQIREKVGVMFGNPEVTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGKGISKEGELIDLGVENEIVDKSGAWYSYNGDRMGQGKENVKSYLKENPAVKAEIDR
KLREKLGIFDGDVEEPEANNTASLLDEEE

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=475109 DMSX03_RS07905 WP_029377444.1 1668905..1669954(-) (recA) [Staphylococcus xylosus strain DMSX03]
TTGGATAACGATCGTCAAAAGGCTTTAGATACAGTAATTAAAAATATGGAGAAATCATTTGGTAAAGGCGCGGTAATGAA
ATTGGGTGATAACGAGGCACGCAAAGTTTCAAGTGTTTCAAGTGGTTCTGTAACATTAGATAATGCTTTAGGAGTAGGTG
GTTACCCTAAGGGTAGAATCATAGAAATTTATGGTCCAGAAAGTTCTGGTAAAACGACTGTGGCTCTTCATGCCATTGCG
GAAGTTCAAAGAAATGGAGGCGTGGCAGCTTTTATTGACGCTGAACACGCATTAGACCCAGTTTACGCAGAAGCATTGGG
TGTTGATATTCAAAATTTATACCTATCTCAACCTGACCATGGGGAACAAGGTTTAGAGATTGCAGAAGCTTTTGTTAGAA
GTGGAGCTGTAGACATAGTTGTTGTTGATTCCGTTGCAGCATTAACACCTAAAGCAGAAATTGAAGGTGAAATGGGAGAT
ACACACGTTGGTTTACAAGCGCGTTTGATGTCACAAGCCCTAAGAAAACTTTCAGGAGCGATATCTAAATCAAATACGAC
AGCCGTATTTATTAACCAAATTCGTGAGAAAGTCGGTGTTATGTTCGGTAATCCTGAAGTTACACCAGGTGGCCGTGCAC
TGAAATTCTACAGTTCTGTTCGTTTAGAAGTACGCCGTGCAGAACAATTAAAACAAGGACAAGATATTGTCGGTAATAGA
ACTAAAATTAAAGTTGTTAAGAATAAAGTGGCACCACCATTTAGAGTTGCTGAAGTCGATATTATGTATGGTAAAGGTAT
CTCTAAAGAGGGAGAATTGATCGATTTAGGTGTTGAAAATGAAATCGTTGATAAGTCAGGTGCTTGGTATTCTTATAATG
GCGACAGAATGGGACAAGGTAAAGAAAACGTAAAATCTTACCTTAAAGAAAACCCTGCTGTCAAAGCAGAAATAGATAGA
AAACTAAGAGAAAAATTAGGAATATTTGATGGAGATGTTGAAGAGCCAGAAGCTAACAATACAGCGTCACTTTTGGATGA
AGAAGAATAG

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.074

93.41

0.711
  recA Latilactobacillus sakei subsp. sakei 23K

71.037

93.983

0.668
  recA Streptococcus pneumoniae D39

63.793

99.713

0.636
  recA Streptococcus pneumoniae Rx1

63.793

99.713

0.636
  recA Streptococcus pneumoniae R6

63.793

99.713

0.636
  recA Streptococcus pneumoniae TIGR4

63.793

99.713

0.636
  recA Streptococcus pyogenes NZ131

67.173

94.269

0.633
  recA Streptococcus mutans UA159

62.857

100

0.63
  recA Streptococcus mitis SK321

65.465

95.415

0.625
  recA Lactococcus lactis subsp. cremoris KW2

65.257

94.842

0.619
  recA Streptococcus mitis NCTC 12261

64.865

95.415

0.619
  recA Neisseria gonorrhoeae MS11

65.35

94.269

0.616
  recA Neisseria gonorrhoeae MS11

65.35

94.269

0.616
  recA Neisseria gonorrhoeae strain FA1090

65.35

94.269

0.616
  recA Helicobacter pylori 26695

64.939

93.983

0.61
  recA Acinetobacter baylyi ADP1

65.031

93.41

0.607
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.438

94.269

0.607
  recA Helicobacter pylori strain NCTC11637

64.634

93.983

0.607
  recA Acinetobacter baumannii D1279779

64.724

93.41

0.605
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.417

93.41

0.602
  recA Vibrio cholerae strain A1552

64.417

93.41

0.602
  recA Ralstonia pseudosolanacearum GMI1000

64.856

89.685

0.582
  recA Glaesserella parasuis strain SC1401

58.261

98.854

0.576
  recA Pseudomonas stutzeri DSM 10701

61.656

93.41

0.576
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.121

94.842

0.57
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.502

91.404

0.553