Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | LC2W_RS05110 | Genome accession | NC_017473 |
| Coordinates | 998817..999878 (+) | Length | 353 a.a. |
| NCBI ID | WP_003598111.1 | Uniprot ID | A0A243PT23 |
| Organism | Lacticaseibacillus paracasei | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 970551..1009841 | 998817..999878 | within | 0 |
Gene organization within MGE regions
Location: 970551..1009841
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LC2W_RS04970 (LC2W_0994) | - | 970551..971549 (-) | 999 | WP_012490951.1 | IS30 family transposase | - |
| LC2W_RS04975 (LC2W_0995) | - | 971787..973115 (-) | 1329 | WP_012491272.1 | metallophosphoesterase | - |
| LC2W_RS04980 (LC2W_0996) | - | 973306..973572 (+) | 267 | WP_003564140.1 | ACT domain-containing protein | - |
| LC2W_RS04985 (LC2W_0997) | - | 973621..974964 (+) | 1344 | WP_014951764.1 | PFL family protein | - |
| LC2W_RS04990 (LC2W_0998) | - | 975074..976129 (+) | 1056 | WP_003569473.1 | competence protein CoiA | - |
| LC2W_RS04995 (LC2W_0999) | - | 976319..976954 (-) | 636 | WP_003601677.1 | DsbA family protein | - |
| LC2W_RS05000 (LC2W_1000) | - | 977024..977617 (-) | 594 | WP_003601679.1 | CYTH domain-containing protein | - |
| LC2W_RS05005 (LC2W_1001) | - | 977811..978482 (+) | 672 | WP_003564145.1 | GTP pyrophosphokinase family protein | - |
| LC2W_RS05010 (LC2W_1002) | - | 978484..979281 (+) | 798 | WP_003564146.1 | NAD kinase | - |
| LC2W_RS05015 (LC2W_1003) | - | 979281..980183 (+) | 903 | WP_012491275.1 | RluA family pseudouridine synthase | - |
| LC2W_RS05020 (LC2W_1004) | - | 980292..981350 (-) | 1059 | WP_012491276.1 | FAD:protein FMN transferase | - |
| LC2W_RS05025 (LC2W_1005) | - | 981507..982142 (-) | 636 | WP_003569480.1 | copper homeostasis protein CutC | - |
| LC2W_RS05030 (LC2W_1006) | - | 982164..982982 (-) | 819 | WP_014566471.1 | undecaprenyl-diphosphate phosphatase | - |
| LC2W_RS05035 (LC2W_1007) | - | 983185..984225 (-) | 1041 | WP_012491278.1 | lactonase family protein | - |
| LC2W_RS05040 (LC2W_1008) | - | 984497..984874 (+) | 378 | WP_014566472.1 | PTS glucitol/sorbitol transporter subunit IIA | - |
| LC2W_RS05045 (LC2W_1009) | rpsN | 984986..985255 (-) | 270 | WP_003564153.1 | 30S ribosomal protein S14 | - |
| LC2W_RS05050 (LC2W_1010) | - | 985383..986360 (-) | 978 | WP_024109435.1 | GMP reductase | - |
| LC2W_RS05055 (LC2W_1011) | - | 986600..987547 (-) | 948 | WP_003564155.1 | magnesium transporter CorA family protein | - |
| LC2W_RS05060 (LC2W_1012) | - | 987613..988455 (+) | 843 | WP_012491280.1 | methyltransferase domain-containing protein | - |
| LC2W_RS05065 (LC2W_1013) | trmL | 988710..989219 (+) | 510 | WP_003564157.1 | tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL | - |
| LC2W_RS05070 (LC2W_1014) | - | 989346..989756 (+) | 411 | WP_003564159.1 | DUF1149 family protein | - |
| LC2W_RS05075 (LC2W_1015) | - | 989929..992250 (+) | 2322 | WP_003604697.1 | FtsK/SpoIIIE family DNA translocase | - |
| LC2W_RS05080 (LC2W_1016) | yfmF | 992259..993521 (+) | 1263 | WP_012491281.1 | EF-P 5-aminopentanol modification-associated protein YfmF | - |
| LC2W_RS05085 (LC2W_1017) | yfmH | 993518..994810 (+) | 1293 | WP_014566474.1 | EF-P 5-aminopentanol modification-associated protein YfmH | - |
| LC2W_RS05090 (LC2W_1018) | ymfI | 994810..995538 (+) | 729 | WP_003569514.1 | elongation factor P 5-aminopentanone reductase | - |
| LC2W_RS05095 (LC2W_1019) | - | 995625..996554 (+) | 930 | WP_003593861.1 | helix-turn-helix domain-containing protein | - |
| LC2W_RS05100 (LC2W_1020) | pgsA | 996551..997144 (+) | 594 | WP_003564171.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| LC2W_RS05105 (LC2W_1021) | cinA | 997519..998760 (+) | 1242 | WP_012491282.1 | competence/damage-inducible protein A | Machinery gene |
| LC2W_RS05110 (LC2W_1022) | recA | 998817..999878 (+) | 1062 | WP_003598111.1 | recombinase RecA | Machinery gene |
| LC2W_RS05115 (LC2W_1023) | rny | 1000180..1001751 (+) | 1572 | WP_003657913.1 | ribonuclease Y | - |
| LC2W_RS05120 (LC2W_1024) | - | 1001845..1002495 (-) | 651 | WP_012491283.1 | YigZ family protein | - |
| LC2W_RS05125 (LC2W_1025) | - | 1002523..1003785 (+) | 1263 | WP_016379935.1 | helicase-related protein | - |
| LC2W_RS05130 (LC2W_1026) | - | 1003998..1004459 (+) | 462 | WP_003583965.1 | ComF family protein | - |
| LC2W_RS05135 (LC2W_1027) | hpf | 1004583..1005140 (+) | 558 | WP_003569531.1 | ribosome hibernation-promoting factor, HPF/YfiA family | - |
| LC2W_RS05140 (LC2W_1029) | secA | 1005474..1007837 (+) | 2364 | WP_003578257.1 | preprotein translocase subunit SecA | - |
| LC2W_RS05145 (LC2W_1030) | prfB | 1007962..1009078 (+) | 1117 | WP_096772597.1 | peptide chain release factor 2 | - |
| LC2W_RS05150 (LC2W_1031) | ftsE | 1009155..1009841 (+) | 687 | WP_012491286.1 | cell division ATP-binding protein FtsE | - |
Sequence
Protein
Download Length: 353 a.a. Molecular weight: 37745.94 Da Isoelectric Point: 5.8234
>NTDB_id=47424 LC2W_RS05110 WP_003598111.1 998817..999878(+) (recA) [Lacticaseibacillus paracasei]
MAGDERQKALDVALKKIEKNFGKGAIMRMGAKADTRVSVVSSGSLAVDDALGVGGFPRGRIVEIYGPESSGKTTVALHAV
AEVQKQGGTAAYIDAENAMDPKYATALGVNIDELLLSQPDTGEQGLEIADELVASGAIDIVVIDSVAALVPRAEIEGDMG
DAHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGIIFGSPETTPGGRALKFYATVRLEIRRSEQIKTGADVVGN
RTKIKVVKNKVAPPFRTAIVDIMYGQGISQTGELVDMAVERDIVEKAGSWYAYQGERIGQGRENAKTYLDNHADLQQTIK
QQVRVAYGMAAAPGRETASVSEDQPEIHQQAEV
MAGDERQKALDVALKKIEKNFGKGAIMRMGAKADTRVSVVSSGSLAVDDALGVGGFPRGRIVEIYGPESSGKTTVALHAV
AEVQKQGGTAAYIDAENAMDPKYATALGVNIDELLLSQPDTGEQGLEIADELVASGAIDIVVIDSVAALVPRAEIEGDMG
DAHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGIIFGSPETTPGGRALKFYATVRLEIRRSEQIKTGADVVGN
RTKIKVVKNKVAPPFRTAIVDIMYGQGISQTGELVDMAVERDIVEKAGSWYAYQGERIGQGRENAKTYLDNHADLQQTIK
QQVRVAYGMAAAPGRETASVSEDQPEIHQQAEV
Nucleotide
Download Length: 1062 bp
>NTDB_id=47424 LC2W_RS05110 WP_003598111.1 998817..999878(+) (recA) [Lacticaseibacillus paracasei]
ATGGCAGGAGACGAACGCCAGAAAGCATTGGATGTTGCACTGAAAAAGATTGAAAAAAATTTTGGTAAAGGCGCGATTAT
GCGAATGGGTGCTAAGGCGGACACGCGCGTTTCCGTTGTCTCTAGCGGCTCACTTGCCGTTGATGATGCACTTGGTGTTG
GGGGCTTTCCGCGCGGACGAATTGTCGAAATTTATGGACCGGAAAGTTCCGGCAAAACAACCGTCGCGCTGCATGCTGTT
GCTGAAGTGCAGAAGCAAGGCGGTACTGCCGCCTATATTGATGCCGAGAATGCGATGGATCCCAAGTACGCAACTGCTTT
GGGCGTCAATATTGACGAATTATTGCTCTCCCAGCCAGACACAGGCGAACAAGGGCTGGAGATTGCTGATGAACTAGTCG
CGTCTGGTGCCATTGATATTGTGGTGATTGATTCAGTTGCTGCTTTGGTGCCGCGGGCTGAGATTGAGGGCGATATGGGG
GATGCCCATGTTGGCTTGCAAGCCCGATTAATGTCACAGGCGTTACGTAAGTTATCCGGTTCCATCAATAAGACAAAAAC
GATTGCTTTATTCATTAATCAGATTCGTGAGAAAGTCGGGATCATTTTTGGGAGTCCGGAAACGACACCAGGTGGTCGCG
CATTGAAGTTTTATGCGACTGTTCGGTTAGAAATCCGGCGGTCGGAACAGATCAAGACAGGCGCAGATGTCGTCGGCAAT
CGCACTAAAATCAAAGTGGTCAAGAATAAGGTGGCACCGCCTTTTCGAACAGCAATTGTGGATATCATGTATGGCCAAGG
CATTTCGCAAACTGGCGAACTTGTCGACATGGCCGTTGAGAGAGATATTGTTGAAAAAGCAGGGTCATGGTACGCGTATC
AAGGTGAACGCATCGGCCAAGGTCGCGAAAACGCTAAGACATATCTTGATAACCACGCTGATCTTCAGCAGACGATTAAA
CAACAGGTTCGCGTGGCTTATGGTATGGCAGCCGCACCTGGTCGGGAGACGGCTTCGGTCAGTGAAGATCAACCCGAAAT
ACATCAACAGGCTGAAGTATGA
ATGGCAGGAGACGAACGCCAGAAAGCATTGGATGTTGCACTGAAAAAGATTGAAAAAAATTTTGGTAAAGGCGCGATTAT
GCGAATGGGTGCTAAGGCGGACACGCGCGTTTCCGTTGTCTCTAGCGGCTCACTTGCCGTTGATGATGCACTTGGTGTTG
GGGGCTTTCCGCGCGGACGAATTGTCGAAATTTATGGACCGGAAAGTTCCGGCAAAACAACCGTCGCGCTGCATGCTGTT
GCTGAAGTGCAGAAGCAAGGCGGTACTGCCGCCTATATTGATGCCGAGAATGCGATGGATCCCAAGTACGCAACTGCTTT
GGGCGTCAATATTGACGAATTATTGCTCTCCCAGCCAGACACAGGCGAACAAGGGCTGGAGATTGCTGATGAACTAGTCG
CGTCTGGTGCCATTGATATTGTGGTGATTGATTCAGTTGCTGCTTTGGTGCCGCGGGCTGAGATTGAGGGCGATATGGGG
GATGCCCATGTTGGCTTGCAAGCCCGATTAATGTCACAGGCGTTACGTAAGTTATCCGGTTCCATCAATAAGACAAAAAC
GATTGCTTTATTCATTAATCAGATTCGTGAGAAAGTCGGGATCATTTTTGGGAGTCCGGAAACGACACCAGGTGGTCGCG
CATTGAAGTTTTATGCGACTGTTCGGTTAGAAATCCGGCGGTCGGAACAGATCAAGACAGGCGCAGATGTCGTCGGCAAT
CGCACTAAAATCAAAGTGGTCAAGAATAAGGTGGCACCGCCTTTTCGAACAGCAATTGTGGATATCATGTATGGCCAAGG
CATTTCGCAAACTGGCGAACTTGTCGACATGGCCGTTGAGAGAGATATTGTTGAAAAAGCAGGGTCATGGTACGCGTATC
AAGGTGAACGCATCGGCCAAGGTCGCGAAAACGCTAAGACATATCTTGATAACCACGCTGATCTTCAGCAGACGATTAAA
CAACAGGTTCGCGTGGCTTATGGTATGGCAGCCGCACCTGGTCGGGAGACGGCTTCGGTCAGTGAAGATCAACCCGAAAT
ACATCAACAGGCTGAAGTATGA
Similar proteins
Only experimentally validated proteins are listed.