Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   H4990_RS03415 Genome accession   NZ_CP059969
Coordinates   660534..661565 (+) Length   343 a.a.
NCBI ID   WP_002858995.1    Uniprot ID   -
Organism   Campylobacter jejuni strain C109     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 655534..666565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4990_RS03395 (H4990_03395) - 655836..658307 (-) 2472 Protein_659 hypothetical protein -
  H4990_RS03400 (H4990_03400) murB 658514..659290 (-) 777 WP_101148485.1 UDP-N-acetylmuramate dehydrogenase -
  H4990_RS03405 (H4990_03405) fliQ 659287..659556 (-) 270 WP_002851290.1 flagellar biosynthesis protein FliQ -
  H4990_RS03410 (H4990_03410) - 659568..660428 (-) 861 WP_070316117.1 menaquinone biosynthesis family protein -
  H4990_RS03415 (H4990_03415) recA 660534..661565 (+) 1032 WP_002858995.1 recombinase RecA Machinery gene
  H4990_RS03420 (H4990_03420) eno 661565..662809 (+) 1245 WP_002865208.1 phosphopyruvate hydratase -
  H4990_RS03425 (H4990_03425) - 662875..663078 (+) 204 WP_002839177.1 hypothetical protein -
  H4990_RS03430 (H4990_03430) cgpA 663068..663730 (+) 663 WP_002866836.1 glycoprotein CgpA -
  H4990_RS03435 (H4990_03435) - 663730..664578 (+) 849 WP_182579352.1 DNA ligase -
  H4990_RS03465 (H4990_03465) - 665255..665651 (+) 397 Protein_668 hypothetical protein -
  H4990_RS03470 (H4990_03470) - 665949..666386 (+) 438 WP_002858990.1 DUF411 domain-containing protein -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37079.30 Da        Isoelectric Point: 4.9784

>NTDB_id=472891 H4990_RS03415 WP_002858995.1 660534..661565(+) (recA) [Campylobacter jejuni strain C109]
MDDNKRKSLDAALKSLDKTFGKGTILRLGDKEVEQIDSIGTGSVGLDLALGIGGVPKGRIIEIYGPESSGKTTLTLHIIA
ECQKAGGVCAFIDAEHALDVKYAKNLGVNTDDLYVSQPDFGEQALEIVETIARSGAVDLIVVDSVAALTPKAEIEGDMGD
QHVGLQARLMSQALRKLTGIVHKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFYASVRLDVRKVATLKQNEEPIGN
RVKVKVVKNKVAPPFRQAEFDVMFGEGLSREGELIDYGVKLDIVDKSGAWFSYKDKKLGQGRENSKAFLKENPEIADEIT
KAIQNSMGIEGMISSSEDDEGEE

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=472891 H4990_RS03415 WP_002858995.1 660534..661565(+) (recA) [Campylobacter jejuni strain C109]
ATGGATGATAATAAAAGAAAATCTCTAGACGCTGCCCTAAAAAGTTTAGATAAAACCTTTGGAAAAGGCACTATTTTAAG
ACTAGGGGATAAAGAAGTCGAGCAAATCGATAGCATAGGCACAGGTTCAGTTGGGCTTGATCTTGCTTTAGGTATAGGCG
GTGTTCCAAAAGGAAGAATTATAGAAATTTATGGACCTGAAAGTTCAGGTAAAACCACTCTAACTTTACATATTATCGCA
GAATGCCAAAAAGCAGGTGGAGTTTGTGCTTTTATCGATGCAGAACATGCGCTTGATGTAAAATATGCTAAAAATTTGGG
TGTAAATACAGATGATTTGTATGTTTCTCAGCCTGATTTTGGAGAACAAGCCTTAGAAATTGTAGAAACTATAGCAAGAA
GTGGCGCAGTAGATCTTATCGTAGTAGATAGCGTTGCAGCGCTTACCCCAAAAGCAGAAATTGAAGGCGATATGGGCGAT
CAACATGTAGGACTTCAAGCAAGACTTATGTCTCAAGCTCTAAGAAAACTTACAGGTATAGTTCATAAAATGAATACCAC
AGTAATTTTTATCAACCAAATTCGTATGAAAATCGGTGCTATGGGTTATGGTACTCCTGAAACCACAACAGGTGGAAATG
CATTAAAATTTTATGCTTCTGTGCGTTTAGATGTTAGAAAAGTAGCAACCTTAAAACAAAACGAAGAACCTATAGGAAAC
CGCGTTAAAGTAAAAGTAGTTAAAAATAAAGTTGCTCCTCCATTCAGACAAGCTGAATTTGATGTGATGTTTGGAGAGGG
TTTAAGCCGTGAAGGTGAATTGATTGATTATGGTGTAAAACTTGATATCGTAGATAAAAGTGGTGCGTGGTTTTCTTATA
AAGATAAAAAACTTGGACAAGGTAGAGAAAATTCAAAAGCTTTCTTAAAAGAAAACCCTGAAATTGCAGATGAAATCACA
AAAGCAATTCAAAATTCTATGGGAATAGAAGGTATGATCAGCAGTAGCGAAGATGACGAAGGAGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

99.708

100

0.997
  recA Helicobacter pylori 26695

76.968

100

0.77
  recA Helicobacter pylori strain NCTC11637

76.676

100

0.767
  recA Neisseria gonorrhoeae MS11

65.103

99.417

0.647
  recA Neisseria gonorrhoeae MS11

65.103

99.417

0.647
  recA Neisseria gonorrhoeae strain FA1090

65.103

99.417

0.647
  recA Acinetobacter baylyi ADP1

62.974

100

0.63
  recA Vibrio cholerae strain A1552

62.029

100

0.624
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.029

100

0.624
  recA Acinetobacter baumannii D1279779

61.808

100

0.618
  recA Glaesserella parasuis strain SC1401

65.031

95.044

0.618
  recA Pseudomonas stutzeri DSM 10701

64.832

95.335

0.618
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.855

96.793

0.618
  recA Ralstonia pseudosolanacearum GMI1000

63.72

95.627

0.609
  recA Bacillus subtilis subsp. subtilis str. 168

63.914

95.335

0.609
  recA Streptococcus pneumoniae R6

58.944

99.417

0.586
  recA Streptococcus pneumoniae Rx1

58.944

99.417

0.586
  recA Streptococcus pneumoniae D39

58.944

99.417

0.586
  recA Streptococcus pneumoniae TIGR4

58.944

99.417

0.586
  recA Streptococcus mitis NCTC 12261

58.48

99.708

0.583
  recA Latilactobacillus sakei subsp. sakei 23K

57.31

99.708

0.571
  recA Streptococcus pyogenes NZ131

58.788

96.21

0.566
  recA Streptococcus mitis SK321

58.359

95.918

0.56
  recA Streptococcus mutans UA159

57.704

96.501

0.557
  recA Lactococcus lactis subsp. cremoris KW2

57.447

95.918

0.551
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.177

92.128

0.545