Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FNFX1_RS00550 Genome accession   NC_017450
Coordinates   110167..111246 (+) Length   359 a.a.
NCBI ID   WP_003032781.1    Uniprot ID   A0A6I4RVU3
Organism   Francisella cf. novicida Fx1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 105167..116246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNFX1_RS00520 (FNFX1_0108) - 105332..107029 (-) 1698 WP_003038179.1 alpha-keto acid decarboxylase family protein -
  FNFX1_RS00525 (FNFX1_0109) - 107130..107483 (-) 354 WP_003032777.1 (2Fe-2S) ferredoxin domain-containing protein -
  FNFX1_RS00530 (FNFX1_0110) sppA 107557..108480 (+) 924 WP_003032778.1 signal peptide peptidase SppA -
  FNFX1_RS00535 (FNFX1_0111) - 108570..109109 (+) 540 WP_014549205.1 OmpH family outer membrane protein -
  FNFX1_RS00540 (FNFX1_0112) - 109245..109667 (+) 423 WP_014549206.1 rhodanese-like domain-containing protein -
  FNFX1_RS00545 (FNFX1_0113) secB 109694..110143 (+) 450 WP_003038185.1 protein-export chaperone SecB -
  FNFX1_RS00550 (FNFX1_0114) recA 110167..111246 (+) 1080 WP_003032781.1 recombinase RecA Machinery gene
  FNFX1_RS00555 (FNFX1_0115) - 111233..111685 (+) 453 WP_003032782.1 regulatory protein RecX -
  FNFX1_RS00560 (FNFX1_0116) - 111859..112338 (+) 480 WP_003032783.1 single-stranded DNA-binding protein -
  FNFX1_RS00565 (FNFX1_0117) - 112373..112711 (-) 339 WP_014549207.1 hypothetical protein -
  FNFX1_RS00570 (FNFX1_0118) - 113020..114174 (+) 1155 WP_014549208.1 acetate/propionate family kinase -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 38843.62 Da        Isoelectric Point: 6.1804

>NTDB_id=47235 FNFX1_RS00550 WP_003032781.1 110167..111246(+) (recA) [Francisella cf. novicida Fx1]
MSKEKALESALSQIEKQFGKGAIMRLGDQEAAHDIDVIPSGIIALDVALGIGGYPKGRIIEIYGHESSGKTTLTLLAIAQ
CQKQGGTAAFVDAEHALDPKYAKLLGVDVDNLIVSQPDTGEQALEIADMLVRSGGVDIVVIDSVAALTPKAEIEGDMGDS
HMGLQARLMSQALRKLTANIKRSNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLEVKKGGSIKDGIDVSGNEI
KVKVVKNKVAPPFKQADFELIYGEGISLEAELIDLGAKYNIIEKSGAWYSYKGKKIGQGKEKSKEYLKENTAERDEIERA
ILELLLPNKYPNKDSNDSPKEGSKIKTKVNPAVTQDELI

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=47235 FNFX1_RS00550 WP_003032781.1 110167..111246(+) (recA) [Francisella cf. novicida Fx1]
ATGAGTAAAGAAAAGGCGCTAGAATCAGCCTTATCACAGATTGAAAAGCAATTTGGTAAAGGCGCTATCATGAGATTAGG
AGATCAAGAAGCTGCTCATGATATTGATGTTATACCTTCCGGTATTATTGCACTTGATGTGGCACTAGGAATAGGAGGCT
ATCCAAAAGGTCGAATTATTGAGATATATGGTCATGAATCATCAGGTAAGACAACATTAACACTTTTAGCTATTGCACAA
TGCCAAAAGCAAGGCGGTACCGCGGCATTTGTCGATGCTGAGCATGCATTAGATCCAAAATATGCGAAGCTTTTAGGTGT
TGATGTTGATAATCTGATCGTGTCACAGCCGGATACAGGTGAGCAAGCTTTAGAGATTGCTGATATGTTGGTACGTTCTG
GAGGTGTTGATATTGTAGTAATTGACTCTGTTGCTGCACTTACGCCAAAGGCAGAGATTGAGGGTGACATGGGCGACTCG
CACATGGGCTTACAAGCAAGATTAATGTCACAAGCGTTAAGAAAGCTTACTGCAAATATCAAGCGCTCAAATACTCTAGT
GATATTCATTAACCAAATCCGTATGAAGATCGGGGTTATGTTTGGTAACCCTGAAACTACAACTGGTGGTAATGCGCTTA
AATTCTATTCATCAGTAAGACTTGAAGTCAAAAAGGGTGGTAGCATCAAAGATGGTATTGATGTTAGTGGTAATGAAATA
AAAGTTAAGGTTGTCAAAAACAAAGTTGCCCCACCTTTTAAACAAGCTGATTTTGAGCTTATTTATGGCGAGGGTATTTC
GCTTGAGGCTGAGCTTATTGATTTGGGCGCTAAGTATAACATTATTGAGAAGTCTGGTGCTTGGTATAGCTATAAGGGTA
AAAAGATTGGTCAAGGCAAAGAGAAGTCAAAAGAGTATTTAAAAGAAAATACTGCTGAACGTGATGAGATTGAAAGAGCT
ATTTTAGAACTCTTGCTACCAAATAAATATCCTAATAAAGATAGTAATGATAGTCCTAAAGAAGGTTCTAAAATCAAAAC
TAAAGTAAATCCAGCAGTTACTCAAGATGAGCTTATCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(5-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I4RVU3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

66.176

94.708

0.627
  recA Acinetobacter baumannii D1279779

68.923

90.529

0.624
  recA Neisseria gonorrhoeae strain FA1090

69.565

89.694

0.624
  recA Neisseria gonorrhoeae MS11

69.565

89.694

0.624
  recA Neisseria gonorrhoeae MS11

69.565

89.694

0.624
  recA Glaesserella parasuis strain SC1401

65.882

94.708

0.624
  recA Pseudomonas stutzeri DSM 10701

67.683

91.365

0.618
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.462

90.529

0.602
  recA Vibrio cholerae strain A1552

66.462

90.529

0.602
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.29

89.415

0.602
  recA Ralstonia pseudosolanacearum GMI1000

67.628

86.908

0.588
  recA Bacillus subtilis subsp. subtilis str. 168

68.182

85.794

0.585
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.72

91.365

0.582
  recA Helicobacter pylori 26695

63.415

91.365

0.579
  recA Helicobacter pylori strain NCTC11637

63.11

91.365

0.577
  recA Streptococcus mitis NCTC 12261

63.158

89.972

0.568
  recA Streptococcus mitis SK321

62.848

89.972

0.565
  recA Streptococcus pneumoniae R6

62.848

89.972

0.565
  recA Streptococcus pneumoniae TIGR4

62.848

89.972

0.565
  recA Streptococcus pneumoniae Rx1

62.848

89.972

0.565
  recA Streptococcus pneumoniae D39

62.848

89.972

0.565
  recA Streptococcus pyogenes NZ131

62.539

89.972

0.563
  recA Streptococcus mutans UA159

61.61

89.972

0.554
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.923

90.529

0.552
  recA Latilactobacillus sakei subsp. sakei 23K

61.587

87.744

0.54
  recA Lactococcus lactis subsp. cremoris KW2

59.443

89.972

0.535

Multiple sequence alignment