Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FN3523_RS00520 Genome accession   NC_017449
Coordinates   105842..106921 (+) Length   359 a.a.
NCBI ID   WP_014547443.1    Uniprot ID   F4BIG9
Organism   Francisella hispaniensis     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 100842..111921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FN3523_RS00490 (FN3523_0100) - 100981..102678 (-) 1698 WP_014547437.1 alpha-keto acid decarboxylase family protein -
  FN3523_RS00495 (FN3523_0101) - 102793..103146 (-) 354 WP_014547438.1 (2Fe-2S) ferredoxin domain-containing protein -
  FN3523_RS00500 (FN3523_0102) - 103232..104155 (+) 924 WP_044247120.1 S49 family peptidase -
  FN3523_RS00505 (FN3523_0103) - 104245..104784 (+) 540 WP_014547440.1 OmpH family outer membrane protein -
  FN3523_RS00510 (FN3523_0104) - 104917..105339 (+) 423 WP_014547441.1 rhodanese-like domain-containing protein -
  FN3523_RS00515 (FN3523_0105) secB 105369..105818 (+) 450 WP_014547442.1 protein-export chaperone SecB -
  FN3523_RS00520 (FN3523_0106) recA 105842..106921 (+) 1080 WP_014547443.1 recombinase RecA Machinery gene
  FN3523_RS00525 (FN3523_0107) - 106908..107363 (+) 456 WP_014547444.1 regulatory protein RecX -
  FN3523_RS00530 (FN3523_0108) - 107525..108004 (+) 480 WP_014547445.1 single-stranded DNA-binding protein -
  FN3523_RS00535 (FN3523_0109) - 108202..108540 (-) 339 WP_044247123.1 hypothetical protein -
  FN3523_RS00540 (FN3523_0110) - 108796..109950 (+) 1155 WP_014547447.1 acetate/propionate family kinase -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 38895.65 Da        Isoelectric Point: 6.1804

>NTDB_id=47225 FN3523_RS00520 WP_014547443.1 105842..106921(+) (recA) [Francisella hispaniensis]
MSKEKALESALSQIEKQFGKGSIMRLGDQETVHDIDVIPSGIIALDVALGIGGYPKGRIIEIYGHESSGKTTLTLLAIAQ
CQKQGGTAAFVDAEHALDPKYAKLLGVDVDNLIVSQPDTGEQALEIADMLVRSGGVDIVVIDSVAALTPKAEIEGDMGDS
HMGLQARLMSQALRKLTANIKRSNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLEVRKGGSIKDGIDVSGNEI
KVKIVKNKVAPPFKQADFELIYGEGISLEAELIDLGAKYNIIEKSGAWYSYKGKKIGQGKEKSKEYLKENIAERDEIERA
ILELLLPSKYANKVSDENSQKDSKAKAKINSAATQDELI

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=47225 FN3523_RS00520 WP_014547443.1 105842..106921(+) (recA) [Francisella hispaniensis]
ATGAGTAAAGAAAAAGCTCTAGAATCAGCCTTATCACAAATTGAGAAACAATTTGGTAAAGGCTCTATCATGAGACTAGG
CGATCAAGAAACTGTTCATGATATTGATGTTATACCTTCAGGTATTATTGCTCTTGATGTTGCACTGGGAATAGGTGGAT
ATCCAAAAGGTCGAATTATTGAGATATATGGACATGAGTCATCAGGTAAAACAACACTGACGCTTTTAGCTATTGCACAA
TGTCAAAAGCAAGGTGGTACCGCAGCATTTGTTGATGCTGAGCATGCACTAGATCCAAAGTATGCAAAGCTTTTAGGTGT
TGATGTTGATAATCTGATAGTGTCACAGCCGGATACGGGTGAACAAGCTTTAGAGATTGCTGATATGTTAGTACGTTCTG
GGGGAGTTGATATTGTGGTAATTGACTCCGTTGCAGCACTTACGCCGAAAGCAGAAATTGAAGGTGACATGGGTGACTCA
CATATGGGCTTGCAAGCAAGGCTAATGTCACAAGCACTAAGAAAACTTACGGCAAATATCAAGCGTTCAAATACTCTAGT
AATATTCATTAACCAAATTCGTATGAAGATTGGGGTAATGTTTGGTAATCCTGAGACTACAACTGGTGGTAATGCTCTTA
AGTTCTATTCATCAGTAAGGCTTGAAGTTAGAAAAGGCGGTAGTATTAAAGATGGTATTGATGTTAGTGGTAATGAAATA
AAAGTTAAGATTGTCAAAAACAAAGTTGCACCACCTTTTAAACAAGCTGACTTTGAGCTTATTTATGGTGAAGGTATTTC
TCTTGAAGCTGAGCTTATTGATTTAGGCGCTAAGTATAACATTATTGAGAAGTCTGGCGCTTGGTATAGCTATAAGGGTA
AAAAGATTGGTCAAGGTAAAGAAAAGTCAAAAGAGTATTTAAAAGAAAATATAGCTGAGCGTGATGAAATTGAAAGAGCT
ATTTTAGAGCTTTTACTGCCAAGTAAATACGCTAATAAAGTTTCTGATGAGAACTCTCAAAAAGACTCTAAAGCCAAGGC
TAAAATAAATTCAGCAGCTACTCAAGATGAGCTTATCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(5-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F4BIG9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

67.155

94.986

0.638
  recA Acinetobacter baumannii D1279779

67.059

94.708

0.635
  recA Glaesserella parasuis strain SC1401

65.306

95.543

0.624
  recA Neisseria gonorrhoeae MS11

69.255

89.694

0.621
  recA Neisseria gonorrhoeae MS11

69.255

89.694

0.621
  recA Neisseria gonorrhoeae strain FA1090

69.255

89.694

0.621
  recA Pseudomonas stutzeri DSM 10701

65.875

93.872

0.618
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.93

94.986

0.607
  recA Vibrio cholerae strain A1552

63.93

94.986

0.607
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.601

89.415

0.604
  recA Ralstonia pseudosolanacearum GMI1000

68.269

86.908

0.593
  recA Streptococcus mitis NCTC 12261

60.92

96.936

0.591
  recA Streptococcus mitis SK321

60.92

96.936

0.591
  recA Bacillus subtilis subsp. subtilis str. 168

68.831

85.794

0.591
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.72

91.365

0.582
  recA Streptococcus pneumoniae D39

60.057

96.936

0.582
  recA Streptococcus pneumoniae Rx1

60.057

96.936

0.582
  recA Streptococcus pneumoniae R6

60.057

96.936

0.582
  recA Streptococcus pneumoniae TIGR4

60.057

96.936

0.582
  recA Helicobacter pylori 26695

64.286

89.694

0.577
  recA Helicobacter pylori strain NCTC11637

63.975

89.694

0.574
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.846

90.529

0.56
  recA Streptococcus pyogenes NZ131

61.92

89.972

0.557
  recA Streptococcus mutans UA159

60.991

89.972

0.549
  recA Latilactobacillus sakei subsp. sakei 23K

61.905

87.744

0.543
  recA Lactococcus lactis subsp. cremoris KW2

59.443

89.972

0.535

Multiple sequence alignment