Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CTDEC_RS03490 Genome accession   NC_017434
Coordinates   745343..746401 (+) Length   352 a.a.
NCBI ID   WP_010725291.1    Uniprot ID   P0CD80
Organism   Chlamydia trachomatis D-EC     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 740343..751401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CTDEC_RS03460 (CTDEC_0645) - 740924..741220 (-) 297 WP_009872015.1 YggT family protein -
  CTDEC_RS03465 (CTDEC_0646) - 741321..742700 (+) 1380 WP_009872016.1 hypothetical protein -
  CTDEC_RS03470 (CTDEC_0647) - 742700..743278 (+) 579 WP_009872017.1 hypothetical protein -
  CTDEC_RS03475 (CTDEC_0648) - 743269..744543 (+) 1275 WP_010725289.1 toxin-antitoxin system YwqK family antitoxin -
  CTDEC_RS03480 (CTDEC_0649) - 744546..745082 (+) 537 WP_010725290.1 5-formyltetrahydrofolate cyclo-ligase -
  CTDEC_RS03490 (CTDEC_0650) recA 745343..746401 (+) 1059 WP_010725291.1 recombinase RecA Machinery gene
  CTDEC_RS03495 (CTDEC_0651) - 746687..748513 (+) 1827 WP_010725292.1 DUF1347 family protein -
  CTDEC_RS03500 (CTDEC_0652) recD 748510..750000 (+) 1491 WP_009872023.1 exodeoxyribonuclease V subunit alpha -
  CTDEC_RS03505 (CTDEC_065201) - 750066..750245 (+) 180 WP_009872024.1 hypothetical protein -
  CTDEC_RS03510 (CTDEC_0653) lptB 750346..751065 (-) 720 WP_009872025.1 LPS export ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37830.34 Da        Isoelectric Point: 7.3744

>NTDB_id=47161 CTDEC_RS03490 WP_010725291.1 745343..746401(+) (recA) [Chlamydia trachomatis D-EC]
MSVPDRKRALEAAIAYIEKQFGAGSIMSLGKHSSAHEISTIKTGALSLDLALGIGGVPKGRIVEIFGPESSGKTTLATHI
VANAQKMGGVAAYIDAEHALDPNYAALIGANINDLMISQPDCGEDALSIAELLARSGAVDVIVIDSVAALVPKSELEGEI
GDVHVGLQARMMSQALRKLTATLARTNTCAIFINQIREKIGVSFGNPETTTGGRALKFYSSIRIDIRRIGSIKGGENFDI
GNRIKVKVAKNKLAPPFRTAEFDILFNEGISSAGCIIDLAVEKNIIDKKGSWFNYQDRKLGQGREAVREELKRNKELFHE
LERRIYESVQASQVPAAACVDAESREVAEAAK

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=47161 CTDEC_RS03490 WP_010725291.1 745343..746401(+) (recA) [Chlamydia trachomatis D-EC]
ATGAGCGTTCCCGACCGAAAAAGGGCTTTGGAAGCGGCCATTGCTTATATCGAAAAGCAATTTGGCGCAGGATCTATCAT
GAGTTTAGGAAAGCATTCTTCAGCTCATGAGATATCAACTATTAAAACAGGTGCATTGTCGTTGGATTTAGCCTTAGGAA
TAGGCGGGGTTCCTAAAGGAAGAATTGTAGAGATTTTTGGGCCAGAGTCTTCAGGGAAAACAACTCTAGCGACGCATATA
GTGGCCAATGCTCAAAAGATGGGCGGGGTAGCAGCTTATATCGATGCCGAGCACGCTTTGGATCCTAATTATGCTGCGCT
TATTGGAGCAAATATTAATGATTTAATGATTTCTCAGCCTGACTGTGGAGAGGATGCTTTGAGTATTGCAGAGCTCTTAG
CACGTTCTGGAGCTGTCGATGTGATTGTGATTGACTCGGTAGCAGCATTGGTTCCAAAGAGCGAGTTAGAAGGGGAAATT
GGAGATGTCCATGTTGGGTTGCAGGCTCGCATGATGTCGCAGGCTTTACGCAAATTGACTGCAACCTTAGCACGAACAAA
TACTTGTGCCATTTTCATTAACCAGATTCGGGAGAAAATAGGTGTGAGTTTTGGTAATCCAGAGACTACGACTGGAGGAC
GTGCGTTGAAGTTTTATTCTTCGATTCGTATCGATATTCGTCGTATTGGCTCTATAAAGGGAGGAGAAAATTTCGATATA
GGGAATCGTATCAAGGTGAAAGTAGCGAAAAATAAATTAGCTCCTCCATTCCGAACGGCAGAATTTGATATCTTATTTAA
TGAAGGGATTTCTTCTGCAGGATGTATTATCGATCTCGCTGTCGAAAAAAACATTATCGATAAGAAAGGATCATGGTTCA
ACTACCAGGATCGTAAGTTAGGTCAAGGTCGAGAAGCGGTTCGAGAGGAGTTGAAAAGGAACAAAGAGTTGTTCCACGAG
TTGGAACGCCGTATTTATGAGTCTGTACAGGCTTCACAAGTCCCAGCAGCAGCTTGCGTGGATGCAGAGTCTCGCGAGGT
AGCAGAGGCTGCGAAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0CD80

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

59.697

93.75

0.56
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.215

94.034

0.557
  recA Bacillus subtilis subsp. subtilis str. 168

60.681

91.761

0.557
  recA Helicobacter pylori 26695

59.091

93.75

0.554
  recA Helicobacter pylori strain NCTC11637

58.788

93.75

0.551
  recA Neisseria gonorrhoeae strain FA1090

60.125

91.193

0.548
  recA Neisseria gonorrhoeae MS11

60.125

91.193

0.548
  recA Neisseria gonorrhoeae MS11

60.125

91.193

0.548
  recA Streptococcus mitis NCTC 12261

54.52

100

0.548
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.202

92.614

0.548
  recA Glaesserella parasuis strain SC1401

59.259

92.045

0.545
  recA Latilactobacillus sakei subsp. sakei 23K

55.331

98.58

0.545
  recA Streptococcus mitis SK321

54.598

98.864

0.54
  recA Lactococcus lactis subsp. cremoris KW2

58.282

92.614

0.54
  recA Pseudomonas stutzeri DSM 10701

58.567

91.193

0.534
  recA Vibrio cholerae strain A1552

57.895

91.761

0.531
  recA Vibrio cholerae O1 biovar El Tor strain E7946

57.895

91.761

0.531
  recA Acinetobacter baylyi ADP1

57.231

92.33

0.528
  recA Streptococcus mutans UA159

57.099

92.045

0.526
  recA Streptococcus pyogenes NZ131

56.79

92.045

0.523
  recA Acinetobacter baumannii D1279779

54.277

96.307

0.523
  recA Streptococcus pneumoniae TIGR4

56.173

92.045

0.517
  recA Streptococcus pneumoniae Rx1

56.173

92.045

0.517
  recA Streptococcus pneumoniae D39

56.173

92.045

0.517
  recA Streptococcus pneumoniae R6

56.173

92.045

0.517
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.434

92.898

0.506

Multiple sequence alignment