Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   H2512_RS08295 Genome accession   NZ_CP059703
Coordinates   1738577..1739641 (+) Length   354 a.a.
NCBI ID   WP_316726782.1    Uniprot ID   -
Organism   Pasteurella multocida strain RCAD0726     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1733577..1744641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2512_RS08290 (H2512_08275) - 1736669..1738267 (-) 1599 WP_316726780.1 SrfA family protein -
  H2512_RS08295 (H2512_08280) recA 1738577..1739641 (+) 1065 WP_316726782.1 recombinase RecA Machinery gene
  H2512_RS08300 (H2512_08285) recX 1739751..1740206 (+) 456 WP_059245696.1 recombination regulator RecX -
  H2512_RS08305 (H2512_08290) - 1740301..1741566 (-) 1266 WP_316726785.1 heme biosynthesis protein HemY -
  H2512_RS08310 (H2512_08295) - 1741579..1742982 (-) 1404 WP_316726787.1 uroporphyrinogen-III C-methyltransferase -
  H2512_RS08315 (H2512_08300) - 1743023..1743769 (-) 747 WP_005724810.1 uroporphyrinogen-III synthase -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37964.57 Da        Isoelectric Point: 5.0731

>NTDB_id=471456 H2512_RS08295 WP_316726782.1 1738577..1739641(+) (recA) [Pasteurella multocida strain RCAD0726]
MATKEEKNKALAAALGQIEKQFGKGSIMKLGDTQALDVEAVSTGSLSLDVALGIGGLPMGRIVEIFGPESSGKTTLTLSV
IAQAQKEGKTCAFIDAEHALDPIYAAKLGVNVNELLVSQPDNGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIEGEM
GDSHMGLQARLMSQALRKLTGQIKNSNCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVIG
NETRVKVVKNKVAAPFRQVDFQILYGQGISKTGELIELGVKHKLVDKAGAWYAYNGEKIGQGKANAMKWLEEHPEEALAL
ETKLRNELLANPEKVLAADIEEKNESSTGLEADY

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=471456 H2512_RS08295 WP_316726782.1 1738577..1739641(+) (recA) [Pasteurella multocida strain RCAD0726]
ATGGCAACAAAAGAAGAAAAAAATAAAGCACTGGCAGCAGCACTTGGGCAGATTGAAAAACAATTTGGGAAAGGCTCTAT
TATGAAATTGGGCGATACCCAAGCCTTGGATGTTGAAGCCGTGTCAACAGGCTCCTTAAGCCTCGACGTCGCACTTGGCA
TTGGCGGGTTACCAATGGGTCGTATTGTTGAAATTTTCGGGCCTGAATCTTCCGGTAAAACCACCTTAACCCTTTCTGTC
ATTGCGCAAGCACAAAAAGAAGGCAAAACCTGTGCCTTTATTGACGCAGAACACGCATTAGATCCTATTTATGCGGCAAA
ACTGGGCGTCAATGTGAATGAACTGTTAGTTTCCCAACCTGATAACGGTGAACAAGCACTCGAAATTTGTGATGCGTTAG
TGCGTTCAGGTGCAGTAGATGTGATCATTGTGGACTCAGTCGCAGCATTAACCCCGAAAGCGGAAATTGAAGGAGAAATG
GGTGACTCACACATGGGCTTACAAGCACGTTTGATGTCACAAGCATTACGTAAACTCACTGGACAAATCAAAAACTCAAA
TTGCTTAGTGGTCTTTATTAACCAAATCCGTATGAAAATTGGTGTTATGTTCGGTAACCCAGAAACCACAACAGGGGGGA
ATGCACTGAAATTCTATGCCTCTGTACGTTTAGATATTCGCCGTACGGGTGCGATTAAAGAGGGTGAAGAAGTGATCGGT
AACGAAACCCGTGTCAAAGTGGTGAAAAACAAAGTGGCGGCACCATTCCGTCAAGTAGATTTCCAAATTCTTTACGGTCA
AGGTATTTCTAAAACAGGCGAGCTCATCGAGTTAGGCGTAAAACACAAATTAGTGGATAAAGCAGGTGCATGGTACGCTT
ACAATGGTGAAAAAATCGGTCAAGGTAAAGCTAACGCGATGAAATGGTTAGAAGAGCATCCTGAAGAAGCATTGGCTTTA
GAAACGAAATTACGCAATGAGTTGCTCGCGAATCCAGAAAAAGTACTCGCGGCAGACATTGAGGAAAAAAATGAAAGCTC
TACGGGCTTAGAAGCGGATTATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

80.967

93.503

0.757
  recA Vibrio cholerae O1 biovar El Tor strain E7946

80.967

93.503

0.757
  recA Glaesserella parasuis strain SC1401

76.385

96.893

0.74
  recA Pseudomonas stutzeri DSM 10701

74.852

95.48

0.715
  recA Acinetobacter baumannii D1279779

69.253

98.305

0.681
  recA Acinetobacter baylyi ADP1

70.674

96.328

0.681
  recA Neisseria gonorrhoeae MS11

72.981

90.96

0.664
  recA Neisseria gonorrhoeae MS11

72.981

90.96

0.664
  recA Neisseria gonorrhoeae strain FA1090

72.981

90.96

0.664
  recA Ralstonia pseudosolanacearum GMI1000

71.56

92.373

0.661
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.349

93.785

0.585
  recA Streptococcus pneumoniae D39

58.523

99.435

0.582
  recA Streptococcus pneumoniae Rx1

58.523

99.435

0.582
  recA Streptococcus pneumoniae R6

58.523

99.435

0.582
  recA Streptococcus pneumoniae TIGR4

58.523

99.435

0.582
  recA Helicobacter pylori strain NCTC11637

62.577

92.09

0.576
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.462

91.808

0.573
  recA Streptococcus mitis NCTC 12261

57.345

100

0.573
  recA Bacillus subtilis subsp. subtilis str. 168

63.125

90.395

0.571
  recA Helicobacter pylori 26695

61.963

92.09

0.571
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.468

92.373

0.568
  recA Latilactobacillus sakei subsp. sakei 23K

60.559

90.96

0.551
  recA Streptococcus mitis SK321

60.185

91.525

0.551
  recA Streptococcus mutans UA159

59.692

91.808

0.548
  recA Streptococcus pyogenes NZ131

59.692

91.808

0.548
  recA Lactococcus lactis subsp. cremoris KW2

58.951

91.525

0.54