Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CMOL_RS07515 Genome accession   NZ_CP059597
Coordinates   1473561..1474589 (-) Length   342 a.a.
NCBI ID   WP_200282459.1    Uniprot ID   -
Organism   Campylobacter sp. RM10537     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1468561..1479589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CMOL_RS07465 (CMOL_1476) - 1468813..1469892 (-) 1080 WP_239820270.1 hypothetical protein -
  CMOL_RS07495 (CMOL_1482) - 1470561..1471400 (-) 840 WP_200282469.1 DNA ligase -
  CMOL_RS07500 (CMOL_1483) - 1471400..1472056 (-) 657 WP_239820271.1 AMIN domain-containing protein -
  CMOL_RS07505 (CMOL_1484) - 1472046..1472249 (-) 204 WP_200282461.1 hypothetical protein -
  CMOL_RS07510 (CMOL_1485) eno 1472315..1473559 (-) 1245 WP_239820272.1 phosphopyruvate hydratase -
  CMOL_RS07515 (CMOL_1486) recA 1473561..1474589 (-) 1029 WP_200282459.1 recombinase RecA Machinery gene
  CMOL_RS07520 (CMOL_1487) - 1474723..1475586 (+) 864 WP_200282457.1 menaquinone biosynthesis family protein -
  CMOL_RS07525 (CMOL_1488) fliQ 1475596..1475865 (+) 270 WP_200282455.1 flagellar biosynthesis protein FliQ -
  CMOL_RS07530 (CMOL_1489) - 1475862..1476638 (+) 777 WP_239820273.1 UDP-N-acetylmuramate dehydrogenase -
  CMOL_RS07535 (CMOL_1490) - 1476675..1476848 (+) 174 WP_200282449.1 hypothetical protein -
  CMOL_RS07540 (CMOL_1491) - 1476851..1477600 (-) 750 WP_239820274.1 hypothetical protein -
  CMOL_RS07545 (CMOL_1492) - 1477618..1478382 (-) 765 WP_200282466.1 inositol monophosphatase family protein -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 37034.28 Da        Isoelectric Point: 4.9821

>NTDB_id=471206 CMOL_RS07515 WP_200282459.1 1473561..1474589(-) (recA) [Campylobacter sp. RM10537]
MDDNKKKSLDAALKSLDKAFGKGTILRLGDKEVEQIDSISTGSVGLDLALGIGGIPKGRIIEIYGPESSGKTTLTLHIIA
ECQKAGGICAFIDAEHALDVKYARNLGVDTDNLYISQPDFGEQALEIVETIARSGAIDLIVVDSVAALTPKAEIEGDMGD
QHVGLQARLMSQALRKLTGIVHKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFYASVRLDVRKVASLKQSEEVIGN
RVKVKVVKNKVAPPFRQAEFDVMFGEGLSREGELIDYGVKLDIVDKSGAWFSYKDKKLGQGRENSKAFLKENPEVAEEIT
KEIQNSIGVEGMISASENDEED

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=471206 CMOL_RS07515 WP_200282459.1 1473561..1474589(-) (recA) [Campylobacter sp. RM10537]
ATGGACGATAATAAGAAAAAATCTTTAGATGCAGCCTTAAAAAGCCTTGATAAAGCTTTTGGAAAAGGGACAATTTTAAG
GCTAGGAGATAAGGAAGTTGAACAAATTGATAGTATAAGTACTGGATCAGTTGGCTTAGATCTTGCTTTAGGTATAGGAG
GCATACCTAAAGGAAGAATTATTGAAATTTATGGTCCTGAAAGTTCTGGTAAAACAACTCTTACTCTTCATATTATTGCA
GAATGTCAAAAAGCGGGTGGAATTTGTGCTTTTATAGATGCAGAGCATGCGTTAGATGTTAAATATGCTAGAAATTTGGG
CGTTGATACAGATAATCTTTATATTTCTCAACCTGATTTTGGCGAGCAAGCATTGGAAATTGTAGAAACAATAGCTAGAA
GCGGTGCTATCGATCTTATTGTTGTTGATAGCGTAGCTGCTTTAACACCAAAAGCAGAAATTGAGGGTGATATGGGAGAT
CAGCATGTAGGTCTTCAAGCAAGATTGATGTCGCAAGCCTTAAGAAAACTTACTGGTATTGTGCATAAGATGAATACAAC
GGTTATTTTTATTAATCAAATTCGTATGAAAATAGGTGCTATGGGTTATGGAACTCCAGAAACGACAACTGGAGGGAATG
CACTTAAATTTTATGCCTCTGTGCGTTTAGATGTTAGAAAAGTAGCAAGTTTAAAGCAAAGTGAAGAGGTTATAGGCAAT
CGCGTGAAAGTAAAAGTGGTTAAAAATAAAGTCGCTCCTCCATTTAGACAAGCTGAATTTGATGTGATGTTTGGAGAGGG
CTTGAGTCGTGAAGGTGAATTGATTGATTATGGTGTTAAACTTGATATTGTAGATAAAAGTGGTGCTTGGTTTTCTTATA
AAGATAAAAAATTGGGACAAGGTAGAGAAAATTCAAAAGCATTTTTAAAAGAAAATCCTGAAGTAGCTGAGGAAATTACT
AAAGAAATTCAAAATTCCATAGGTGTTGAAGGTATGATCAGCGCCTCTGAAAACGATGAAGAGGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

94.118

99.415

0.936
  recA Helicobacter pylori 26695

79.268

95.906

0.76
  recA Helicobacter pylori strain NCTC11637

78.659

95.906

0.754
  recA Neisseria gonorrhoeae MS11

65.889

100

0.661
  recA Neisseria gonorrhoeae MS11

65.889

100

0.661
  recA Neisseria gonorrhoeae strain FA1090

65.889

100

0.661
  recA Glaesserella parasuis strain SC1401

63.188

100

0.637
  recA Acinetobacter baumannii D1279779

62.899

100

0.635
  recA Acinetobacter baylyi ADP1

63.45

100

0.635
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.157

97.076

0.623
  recA Ralstonia pseudosolanacearum GMI1000

64.742

96.199

0.623
  recA Pseudomonas stutzeri DSM 10701

64.815

94.737

0.614
  recA Bacillus subtilis subsp. subtilis str. 168

63.303

95.614

0.605
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.58

94.737

0.602
  recA Vibrio cholerae strain A1552

63.58

94.737

0.602
  recA Streptococcus pneumoniae Rx1

57.895

100

0.579
  recA Streptococcus pneumoniae D39

57.895

100

0.579
  recA Streptococcus pneumoniae R6

57.895

100

0.579
  recA Streptococcus pneumoniae TIGR4

57.895

100

0.579
  recA Streptococcus mitis NCTC 12261

57.602

100

0.576
  recA Streptococcus mitis SK321

58.663

96.199

0.564
  recA Streptococcus pyogenes NZ131

58.182

96.491

0.561
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.951

94.737

0.558
  recA Streptococcus mutans UA159

57.402

96.784

0.556
  recA Latilactobacillus sakei subsp. sakei 23K

57.798

95.614

0.553
  recA Lactococcus lactis subsp. cremoris KW2

56.839

96.199

0.547