Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   H3006_RS06610 Genome accession   NZ_CP059592
Coordinates   1409395..1410441 (+) Length   348 a.a.
NCBI ID   WP_003428218.1    Uniprot ID   A0A031WFI0
Organism   Clostridioides difficile CD196     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1404395..1415441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3006_RS06595 mnmH 1406192..1407250 (+) 1059 WP_009889105.1 tRNA 2-selenouridine(34) synthase MnmH -
  H3006_RS06600 rimO 1407244..1408578 (+) 1335 WP_009892976.1 30S ribosomal protein S12 methylthiotransferase RimO -
  H3006_RS06605 pgsA 1408565..1409107 (+) 543 WP_009889106.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  H3006_RS06610 recA 1409395..1410441 (+) 1047 WP_003428218.1 recombinase RecA Machinery gene
  H3006_RS06615 rny 1410617..1412158 (+) 1542 WP_003428216.1 ribonuclease Y -
  H3006_RS06620 - 1412793..1414574 (+) 1782 WP_003438344.1 UvrD-helicase domain-containing protein -
  H3006_RS06625 lepB 1414656..1415186 (-) 531 WP_009889108.1 signal peptidase I -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37377.68 Da        Isoelectric Point: 4.8236

>NTDB_id=471175 H3006_RS06610 WP_003428218.1 1409395..1410441(+) (recA) [Clostridioides difficile CD196]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=471175 H3006_RS06610 WP_003428218.1 1409395..1410441(+) (recA) [Clostridioides difficile CD196]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mutans UA159

66.762

100

0.67
  recA Streptococcus mitis SK321

67.456

97.126

0.655
  recA Streptococcus pneumoniae Rx1

65.507

99.138

0.649
  recA Streptococcus pneumoniae R6

65.507

99.138

0.649
  recA Streptococcus pneumoniae D39

65.507

99.138

0.649
  recA Streptococcus pneumoniae TIGR4

65.507

99.138

0.649
  recA Streptococcus mitis NCTC 12261

68.085

94.54

0.644
  recA Bacillus subtilis subsp. subtilis str. 168

69.565

92.529

0.644
  recA Lactococcus lactis subsp. cremoris KW2

65.569

95.977

0.629
  recA Streptococcus pyogenes NZ131

66.972

93.966

0.629
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.758

94.828

0.624
  recA Latilactobacillus sakei subsp. sakei 23K

64.955

95.115

0.618
  recA Neisseria gonorrhoeae MS11

66.049

93.103

0.615
  recA Neisseria gonorrhoeae MS11

66.049

93.103

0.615
  recA Neisseria gonorrhoeae strain FA1090

66.049

93.103

0.615
  recA Acinetobacter baylyi ADP1

64.396

92.816

0.598
  recA Pseudomonas stutzeri DSM 10701

63.889

93.103

0.595
  recA Helicobacter pylori 26695

61.976

95.977

0.595
  recA Helicobacter pylori strain NCTC11637

61.976

95.977

0.595
  recA Acinetobacter baumannii D1279779

63.777

92.816

0.592
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.048

95.402

0.592
  recA Vibrio cholerae strain A1552

62.048

95.402

0.592
  recA Glaesserella parasuis strain SC1401

64.174

92.241

0.592
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.272

93.103

0.589
  recA Ralstonia pseudosolanacearum GMI1000

66.558

88.506

0.589
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.681

92.816

0.563