Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   HBNCFIEN_RS06550 Genome accession   NZ_CP059576
Coordinates   1542935..1543981 (+) Length   348 a.a.
NCBI ID   WP_182393259.1    Uniprot ID   A0A7G4RFH5
Organism   Legionella sp. PC997     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1537935..1548981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBNCFIEN_RS06520 (HBNCFIEN_01314) - 1538222..1539631 (+) 1410 WP_182393254.1 aldehyde dehydrogenase family protein -
  HBNCFIEN_RS06525 (HBNCFIEN_01315) - 1539631..1540839 (+) 1209 WP_370530111.1 iron-containing alcohol dehydrogenase -
  HBNCFIEN_RS06530 (HBNCFIEN_01316) - 1540848..1541549 (+) 702 WP_182393255.1 GMP synthase -
  HBNCFIEN_RS06535 (HBNCFIEN_01317) - 1541666..1541842 (+) 177 WP_182393256.1 hypothetical protein -
  HBNCFIEN_RS06540 (HBNCFIEN_01318) - 1541898..1542386 (+) 489 WP_182393257.1 CinA family protein -
  HBNCFIEN_RS06545 (HBNCFIEN_01319) - 1542492..1542707 (-) 216 WP_182393258.1 hypothetical protein -
  HBNCFIEN_RS06550 (HBNCFIEN_01320) recA 1542935..1543981 (+) 1047 WP_182393259.1 recombinase RecA Machinery gene
  HBNCFIEN_RS06555 (HBNCFIEN_01321) recX 1543974..1544414 (+) 441 WP_182393260.1 recombination regulator RecX -
  HBNCFIEN_RS06560 (HBNCFIEN_01322) alaS 1544527..1547109 (+) 2583 WP_182393261.1 alanine--tRNA ligase -
  HBNCFIEN_RS06565 (HBNCFIEN_01323) mscL 1547183..1547566 (+) 384 WP_182393262.1 large conductance mechanosensitive channel protein MscL -
  HBNCFIEN_RS17695 (HBNCFIEN_01324) - 1547675..1547872 (+) 198 WP_255464381.1 Thivi_2564 family membrane protein -
  HBNCFIEN_RS06570 (HBNCFIEN_01325) - 1547945..1548667 (-) 723 WP_182393263.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence


Protein


Download         Length: 348 a.a.        Molecular weight: 37780.39 Da        Isoelectric Point: 5.1886

>NTDB_id=470905 HBNCFIEN_RS06550 WP_182393259.1 1542935..1543981(+) (recA) [Legionella sp. PC997]
MEENKQKALSAALSQIERQFGKGSVMRMGDSTVSRDIEAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLQVI
AECQKIGGTAAFIDAEHALDPSYAQKLGVNVDELLVSQPDTGEQALEITDMLVRSAAVDVIIVDSVAALTPKAEIEGEMG
DSHVGLQARLMSQALRKLTANIKRSNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKKGEEILGS
ETRVKVVKNKVAPPFKMTEFDILYNEGISRESEIINLGVQLNLIEKSGAWYSYKGEKIGQGKDNVRLYLKENPQIAATLE
HQIRTELLEKKLPMLASASAEEFEAVDD

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=470905 HBNCFIEN_RS06550 WP_182393259.1 1542935..1543981(+) (recA) [Legionella sp. PC997]
ATGGAAGAAAATAAACAAAAAGCATTATCCGCAGCCCTCTCGCAAATTGAACGTCAGTTTGGCAAGGGATCAGTGATGCG
TATGGGTGACAGTACTGTCTCTCGAGATATAGAGGCCATTTCAACAGGGTCTTTAGGATTAGACATTGCATTGGGAATTG
GCGGTTTGCCCAAAGGACGTATCGTTGAAATTTATGGCCCAGAGTCTTCTGGTAAAACCACTTTAACATTACAAGTTATT
GCCGAATGTCAAAAAATAGGAGGCACTGCCGCATTTATTGACGCAGAACACGCTTTGGACCCAAGCTATGCGCAAAAACT
GGGTGTAAATGTGGATGAGCTATTGGTCTCTCAACCTGATACCGGGGAGCAAGCTTTAGAAATTACCGATATGCTGGTAC
GTTCCGCTGCAGTTGATGTCATTATTGTGGACTCTGTTGCTGCCTTAACCCCGAAAGCAGAAATTGAAGGAGAAATGGGA
GATTCACATGTGGGTTTACAAGCTCGACTCATGTCCCAAGCGTTACGGAAATTGACTGCTAATATTAAACGTTCCAATAC
GCTGGTCATTTTTATTAACCAGATTCGTATGAAAATTGGCGTAATGTTTGGTAGTCCCGAAACCACCACTGGAGGTAATG
CATTAAAATTCTACGCTTCTGTTCGCCTGGATATTCGTCGTATTGGATCAATTAAAAAAGGCGAGGAAATCTTGGGTAGT
GAAACACGAGTTAAAGTGGTTAAGAATAAAGTGGCTCCGCCATTTAAGATGACCGAATTTGATATACTGTATAACGAAGG
TATTTCTCGTGAAAGTGAAATTATCAACTTAGGTGTCCAACTCAATCTGATTGAAAAATCTGGAGCTTGGTACAGCTATA
AAGGTGAGAAAATTGGCCAGGGGAAAGATAATGTTCGCTTATACTTAAAAGAGAATCCTCAAATTGCAGCAACTCTTGAA
CATCAAATTCGTACGGAGCTTTTAGAGAAAAAACTCCCTATGCTTGCGTCAGCTAGTGCGGAAGAATTTGAGGCCGTTGA
TGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A7G4RFH5

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

75.793

99.713

0.756

  recA Acinetobacter baylyi ADP1

73.547

98.851

0.727

  recA Vibrio cholerae strain A1552

71.552

100

0.716

  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.552

100

0.716

  recA Acinetobacter baumannii D1279779

75.61

94.253

0.713

  recA Glaesserella parasuis strain SC1401

71.014

99.138

0.704

  recA Ralstonia pseudosolanacearum GMI1000

72.948

94.54

0.69

  recA Neisseria gonorrhoeae MS11

73.457

93.103

0.684

  recA Neisseria gonorrhoeae MS11

73.457

93.103

0.684

  recA Neisseria gonorrhoeae strain FA1090

73.457

93.103

0.684

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.165

95.69

0.624

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.549

94.253

0.618

  recA Bacillus subtilis subsp. subtilis str. 168

65.732

92.241

0.606

  recA Helicobacter pylori 26695

64.615

93.391

0.603

  recA Helicobacter pylori strain NCTC11637

64.615

93.391

0.603

  recA Streptococcus pyogenes NZ131

57.429

100

0.578

  recA Latilactobacillus sakei subsp. sakei 23K

59.05

96.839

0.572

  recA Streptococcus mutans UA159

60.366

94.253

0.569

  recA Streptococcus mitis NCTC 12261

60.55

93.966

0.569

  recA Streptococcus mitis SK321

60.55

93.966

0.569

  recA Streptococcus pneumoniae Rx1

60.55

93.966

0.569

  recA Streptococcus pneumoniae D39

60.55

93.966

0.569

  recA Streptococcus pneumoniae R6

60.55

93.966

0.569

  recA Streptococcus pneumoniae TIGR4

60.55

93.966

0.569

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.021

93.966

0.555

  recA Lactococcus lactis subsp. cremoris KW2

59.259

93.103

0.552