Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   H3L95_RS05450 Genome accession   NZ_CP059566
Coordinates   1110862..1111908 (+) Length   348 a.a.
NCBI ID   WP_003758619.1    Uniprot ID   I2NT83
Organism   Neisseria sicca strain DSM 17713     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1105862..1116908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3L95_RS05425 (H3L95_05425) aspA 1106129..1107526 (-) 1398 WP_003758603.1 aspartate ammonia-lyase -
  H3L95_RS05430 (H3L95_05430) - 1107706..1108581 (-) 876 WP_003758605.1 DMT family transporter -
  H3L95_RS05435 (H3L95_05435) - 1108742..1109353 (-) 612 WP_003758609.1 DnaJ domain-containing protein -
  H3L95_RS05440 (H3L95_05440) ybaK 1109529..1110011 (-) 483 WP_003758611.1 Cys-tRNA(Pro) deacylase -
  H3L95_RS05445 (H3L95_05445) - 1110249..1110599 (+) 351 WP_040668569.1 RidA family protein -
  H3L95_RS05450 (H3L95_05450) recA 1110862..1111908 (+) 1047 WP_003758619.1 recombinase RecA Machinery gene
  H3L95_RS05455 (H3L95_05455) grxD 1111992..1112303 (-) 312 WP_003758621.1 Grx4 family monothiol glutaredoxin -
  H3L95_RS05460 (H3L95_05460) - 1112595..1112867 (+) 273 WP_003758625.1 ACT domain-containing protein -
  H3L95_RS05465 (H3L95_05465) - 1112882..1114237 (+) 1356 WP_003758627.1 PFL family protein -
  H3L95_RS05470 (H3L95_05470) era 1114327..1115253 (-) 927 WP_040668556.1 GTPase Era -
  H3L95_RS05475 (H3L95_05475) rnc 1115429..1116148 (-) 720 WP_003758637.1 ribonuclease III -
  H3L95_RS05480 (H3L95_05480) - 1116419..1116742 (+) 324 WP_003765484.1 DUF2185 domain-containing protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37615.91 Da        Isoelectric Point: 4.8271

>NTDB_id=470730 H3L95_RS05450 WP_003758619.1 1110862..1111908(+) (recA) [Neisseria sicca strain DSM 17713]
MSDEKSKALAAALAQIEKNFGKGSIMKMDGSQQEENLDVISTGSLGVDLALGVGGLPRGRVVEIFGPESSGKTTLCLEAI
AQCQKNGGICAFIDAEHAFDPVYARKLGVKVEELYLSQPDTGEQALEICDTLVRSGGVDMVVVDSVAALVPKAEIEGEMG
DSHVGLQARLMSQALRKLTGHIKRTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGQIKKGDDVIGN
ETKVKVIKNKVAPPFRQAEFDILYGEGVSWEGELIDLGVKYDIVEKSGAWYSYNGAKIGQGKDNVRVWLKENPEIANEID
AKIRAAVGINIDITEGKLDDTDGERPEE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=470730 H3L95_RS05450 WP_003758619.1 1110862..1111908(+) (recA) [Neisseria sicca strain DSM 17713]
ATGTCAGACGAAAAAAGCAAAGCCCTAGCCGCCGCCCTTGCCCAAATTGAAAAAAACTTCGGCAAAGGTTCCATCATGAA
AATGGACGGCAGCCAGCAAGAAGAAAACCTTGACGTCATCTCCACCGGCTCGCTCGGTGTGGACTTGGCGCTCGGCGTCG
GCGGTCTGCCGCGCGGCCGCGTCGTCGAAATCTTCGGCCCCGAATCATCCGGTAAAACCACGCTCTGTCTCGAAGCCATC
GCCCAATGCCAAAAAAACGGCGGTATCTGCGCCTTTATCGACGCCGAACACGCCTTCGACCCCGTTTACGCCCGCAAACT
CGGCGTTAAAGTAGAGGAACTCTACCTCTCCCAACCCGATACCGGCGAGCAGGCTCTGGAAATCTGCGACACGCTGGTAC
GTTCCGGCGGCGTGGACATGGTCGTTGTCGACTCCGTAGCCGCCCTCGTACCCAAAGCCGAAATCGAAGGCGAAATGGGC
GACAGCCACGTCGGCCTGCAAGCCCGCCTGATGAGCCAAGCCCTGCGCAAACTGACCGGCCACATCAAACGCACCAACAC
ACTGGTCGTCTTCATCAACCAAATCCGTATGAAAATCGGCGTGATGTTCGGCAGTCCCGAAACCACCACCGGCGGTAACG
CCCTCAAATTCTACGCCTCCGTCCGCCTCGACATCCGCCGAACCGGACAAATCAAAAAAGGCGACGACGTCATCGGCAAC
GAAACCAAAGTCAAAGTCATCAAAAACAAAGTCGCCCCTCCGTTCCGCCAAGCCGAATTCGATATCCTGTACGGCGAAGG
CGTAAGCTGGGAAGGCGAACTGATCGACCTCGGTGTCAAATACGACATCGTTGAAAAATCAGGCGCATGGTACAGCTACA
ACGGCGCCAAAATCGGACAAGGCAAAGACAACGTCCGCGTATGGTTGAAAGAAAACCCCGAAATCGCCAACGAAATCGAC
GCCAAAATCCGTGCCGCCGTGGGCATCAACATCGATATCACCGAAGGCAAACTGGACGACACCGACGGCGAACGTCCCGA
GGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2NT83

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae MS11

90.23

100

0.902
  recA Neisseria gonorrhoeae strain FA1090

90.23

100

0.902
  recA Neisseria gonorrhoeae MS11

90.23

100

0.902
  recA Ralstonia pseudosolanacearum GMI1000

77.273

94.828

0.733
  recA Pseudomonas stutzeri DSM 10701

72

93.391

0.672
  recA Acinetobacter baylyi ADP1

71.914

93.103

0.67
  recA Glaesserella parasuis strain SC1401

70.732

94.253

0.667
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.605

93.103

0.667
  recA Vibrio cholerae strain A1552

71.605

93.103

0.667
  recA Acinetobacter baumannii D1279779

70.062

93.103

0.652
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.667

94.828

0.632
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.073

94.253

0.632
  recA Bacillus subtilis subsp. subtilis str. 168

66.061

94.828

0.626
  recA Helicobacter pylori strain NCTC11637

64.97

95.977

0.624
  recA Helicobacter pylori 26695

64.97

95.977

0.624
  recA Latilactobacillus sakei subsp. sakei 23K

61.224

98.563

0.603
  recA Streptococcus mutans UA159

59.544

100

0.601
  recA Streptococcus mitis NCTC 12261

60.29

99.138

0.598
  recA Streptococcus pneumoniae Rx1

59.77

100

0.598
  recA Streptococcus pneumoniae D39

59.77

100

0.598
  recA Streptococcus pneumoniae R6

59.77

100

0.598
  recA Streptococcus pneumoniae TIGR4

59.77

100

0.598
  recA Lactococcus lactis subsp. cremoris KW2

59.475

98.563

0.586
  recA Streptococcus pyogenes NZ131

61.212

94.828

0.58
  recA Streptococcus mitis SK321

60.909

94.828

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.245

93.966

0.566