Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FOLKNPGA_RS07175 Genome accession   NZ_CP059400
Coordinates   1648506..1649552 (+) Length   348 a.a.
NCBI ID   WP_182352390.1    Uniprot ID   -
Organism   Legionella sp. PC1000     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1643506..1654552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOLKNPGA_RS07145 (FOLKNPGA_01463) - 1643758..1645149 (+) 1392 WP_182352384.1 aldehyde dehydrogenase family protein -
  FOLKNPGA_RS07150 (FOLKNPGA_01464) - 1645164..1646375 (+) 1212 WP_182352385.1 iron-containing alcohol dehydrogenase -
  FOLKNPGA_RS07155 (FOLKNPGA_01465) - 1646395..1647096 (+) 702 WP_182352386.1 GMP synthase -
  FOLKNPGA_RS07160 (FOLKNPGA_01466) - 1647220..1647399 (+) 180 WP_182352387.1 hypothetical protein -
  FOLKNPGA_RS07165 (FOLKNPGA_01467) - 1647456..1647938 (+) 483 WP_182352388.1 CinA family protein -
  FOLKNPGA_RS07170 (FOLKNPGA_01468) - 1648000..1648221 (-) 222 WP_182352389.1 hypothetical protein -
  FOLKNPGA_RS07175 (FOLKNPGA_01469) recA 1648506..1649552 (+) 1047 WP_182352390.1 recombinase RecA Machinery gene
  FOLKNPGA_RS07180 (FOLKNPGA_01470) recX 1649545..1649985 (+) 441 WP_182352391.1 recombination regulator RecX -
  FOLKNPGA_RS07185 (FOLKNPGA_01471) alaS 1650239..1652863 (+) 2625 WP_182352392.1 alanine--tRNA ligase -
  FOLKNPGA_RS07190 (FOLKNPGA_01472) mscL 1652932..1653318 (+) 387 WP_182352393.1 large-conductance mechanosensitive channel protein MscL -
  FOLKNPGA_RS18890 (FOLKNPGA_01473) - 1653413..1653610 (+) 198 WP_232890844.1 Thivi_2564 family membrane protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37765.35 Da        Isoelectric Point: 5.0627

>NTDB_id=469377 FOLKNPGA_RS07175 WP_182352390.1 1648506..1649552(+) (recA) [Legionella sp. PC1000]
MEENKQKALSAALSQIERQFGKGSVMRMGDSTVSRDIEAISTGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQVI
AECQKMGGTAAFIDAEHALDPSYAQKLGVNVDELLVSQPDTGEQALEITDMLVRSAAVDVIIVDSVAALTPKAEIEGEMG
DSHVGLQARLMSQALRKLTANIKRSNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKKGEEVLGS
ETRVKVVKNKVAPPFKMTEFDILYNEGISRESEIINLGVQLNLIEKSGAWYSYKGEKIGQGKDNVRLYLKENSQVAAVLE
QQIRTELLEKKLPMLASASADEFETIDD

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=469377 FOLKNPGA_RS07175 WP_182352390.1 1648506..1649552(+) (recA) [Legionella sp. PC1000]
ATGGAAGAAAACAAACAAAAAGCATTATCAGCTGCCCTCTCTCAAATTGAACGTCAATTTGGTAAAGGATCAGTGATGCG
TATGGGAGACAGCACCGTATCCCGAGATATAGAAGCCATTTCAACAGGATCTTTAGGATTGGATATCGCATTGGGGATTG
GTGGTCTGCCCAAAGGGCGTGTTGTTGAAATTTATGGTCCCGAATCTTCTGGTAAAACTACTTTGACCTTACAAGTAATT
GCAGAATGTCAAAAAATGGGAGGCACTGCCGCATTTATTGACGCAGAACATGCTTTAGATCCTAGTTATGCACAAAAACT
AGGTGTTAATGTGGATGAATTATTGGTTTCTCAACCGGATACAGGGGAGCAAGCTCTGGAGATTACTGATATGCTGGTTC
GTTCAGCCGCTGTAGATGTAATTATCGTCGACTCTGTTGCGGCATTGACTCCCAAAGCAGAAATTGAAGGGGAAATGGGG
GATTCACATGTTGGTTTACAAGCTCGACTTATGTCGCAAGCGTTACGTAAATTGACCGCTAATATTAAACGGTCCAATAC
CCTAGTTATTTTCATTAACCAAATCCGTATGAAAATTGGTGTGATGTTTGGCAGCCCTGAAACAACCACTGGTGGCAATG
CATTGAAGTTCTATGCTTCTGTCCGCTTGGATATCCGTCGCATTGGGTCAATTAAAAAAGGCGAAGAAGTTTTAGGTAGT
GAAACCCGCGTTAAAGTAGTTAAAAATAAAGTTGCCCCACCATTCAAAATGACTGAATTTGATATTCTTTATAATGAAGG
TATTTCTCGTGAAAGTGAAATTATCAACTTGGGTGTCCAACTCAATCTGATTGAAAAATCGGGTGCTTGGTACAGTTATA
AAGGAGAGAAAATTGGCCAAGGTAAGGATAATGTTCGCTTGTACCTTAAGGAGAATTCTCAAGTTGCAGCAGTTCTTGAG
CAGCAAATCCGTACTGAGCTCCTAGAGAAAAAACTACCTATGCTTGCATCAGCTAGTGCCGATGAATTTGAGACAATTGA
TGACTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

75.504

99.713

0.753
  recA Acinetobacter baylyi ADP1

72.674

98.851

0.718
  recA Acinetobacter baumannii D1279779

74.695

94.253

0.704
  recA Vibrio cholerae strain A1552

70.605

99.713

0.704
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.605

99.713

0.704
  recA Glaesserella parasuis strain SC1401

70.435

99.138

0.698
  recA Ralstonia pseudosolanacearum GMI1000

73.252

94.54

0.693
  recA Neisseria gonorrhoeae MS11

72.84

93.103

0.678
  recA Neisseria gonorrhoeae MS11

72.84

93.103

0.678
  recA Neisseria gonorrhoeae strain FA1090

72.84

93.103

0.678
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.865

95.69

0.621
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.634

94.253

0.609
  recA Bacillus subtilis subsp. subtilis str. 168

65.421

92.241

0.603
  recA Helicobacter pylori strain NCTC11637

64.308

93.391

0.601
  recA Helicobacter pylori 26695

64.308

93.391

0.601
  recA Streptococcus pyogenes NZ131

56.857

100

0.572
  recA Latilactobacillus sakei subsp. sakei 23K

59.05

96.839

0.572
  recA Streptococcus mitis SK321

59.939

93.966

0.563
  recA Streptococcus pneumoniae D39

59.633

93.966

0.56
  recA Streptococcus pneumoniae Rx1

59.633

93.966

0.56
  recA Streptococcus pneumoniae R6

59.633

93.966

0.56
  recA Streptococcus pneumoniae TIGR4

59.633

93.966

0.56
  recA Streptococcus mitis NCTC 12261

59.327

93.966

0.557
  recA Streptococcus mutans UA159

59.146

94.253

0.557
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.716

93.966

0.552
  recA Lactococcus lactis subsp. cremoris KW2

58.951

93.103

0.549