NTDB

Overview

Name	comE1/comEA	Type	Machinery gene
Locus tag	H1D04_RS04850	Genome accession	NZ_CP059326
Coordinates	924056..924268 (+)	Length	70 a.a.
NCBI ID	WP_275686804.1	Uniprot ID	-
Organism	Mannheimia haemolytica strain 0745
Function	dsDNA binding (predicted from homology) DNA binding and uptake

Genomic Context

Location: 919056..929268

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H1D04_RS04835 (H1D04_04790)	mutS	920150..922750 (-)	2601	WP_275686801.1	DNA mismatch repair protein MutS	-
H1D04_RS04840 (H1D04_04795)	-	922900..923466 (+)	567	WP_275686802.1	DUF5358 domain-containing protein	-
H1D04_RS04845	-	923639..923890 (+)	252	WP_275686803.1	hypothetical protein	-
H1D04_RS04850	comE1/comEA	924056..924268 (+)	213	WP_275686804.1	helix-hairpin-helix domain-containing protein	Machinery gene
H1D04_RS04855 (H1D04_04805)	-	924417..925046 (+)	630	WP_275686805.1	FKBP-type peptidyl-prolyl cis-trans isomerase	-
H1D04_RS04860 (H1D04_04810)	-	925110..925625 (+)	516	WP_006248251.1	protein disulfide oxidoreductase	-
H1D04_RS04865 (H1D04_04815)	-	925672..926726 (-)	1055	Protein_926	MFS transporter	-
H1D04_RS04870 (H1D04_04820)	mnmE	926923..928284 (+)	1362	WP_240027366.1	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	-

Sequence

Protein

Download Length: 70 a.a. Molecular weight: 7521.14 Da Isoelectric Point: 9.6270

                                >NTDB_id=468653 H1D04_RS04850 WP_275686804.1 924056..924268(+) (comE1/comEA) [Mannheimia haemolytica strain 0745]

MSAVKKSQKVNINTANEEQLQSLTGIGEAKAKAIVEYRXKHGKIXNAAELANIPGIGDATIEKVAPYLTF

Nucleotide

Download Length: 213 bp

                                >NTDB_id=468653 H1D04_RS04850 WP_275686804.1 924056..924268(+) (comE1/comEA) [Mannheimia haemolytica strain 0745]

ATGTCAGCAGTGAAAAAATCACAAAAAGTGAATATCAACACTGCCAACGAAGAGCAATTACAATCGCTTACCGGCATTGG

TGAAGCAAAAGCCAAAGCGATTGTAGAATACCGCAANAAACACGGTAAAATCAANAATGCAGCAGAACTGGCGAACATTC

CCGGCATTGGCGATGCAACCATTGAGAAAGTTGCTCCATATTTAACTTTCTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(6-69)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comE1/comEA	Haemophilus influenzae Rd KW20	55.385	92.857	0.514
comEA/comE1	Glaesserella parasuis strain SC1401	50.725	98.571	0.5
comEA	Vibrio parahaemolyticus RIMD 2210633	56.364	78.571	0.443
Cj0011c	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	51.667	85.714	0.443
comEA	Acinetobacter baylyi ADP1	52.727	78.571	0.414
comEA	Streptococcus thermophilus LMD-9	43.939	94.286	0.414
comEA	Acinetobacter baumannii D1279779	50.909	78.571	0.4
comEA/celA/cilE	Streptococcus mitis NCTC 12261	39.706	97.143	0.386
comEA/celA/cilE	Streptococcus pneumoniae R6	39.706	97.143	0.386
comEA/celA/cilE	Streptococcus pneumoniae Rx1	39.706	97.143	0.386
comEA/celA/cilE	Streptococcus pneumoniae D39	39.706	97.143	0.386
comEA/celA/cilE	Streptococcus pneumoniae TIGR4	39.706	97.143	0.386
comEA	Vibrio campbellii strain DS40M4	49.091	78.571	0.386
comEA	Acinetobacter baumannii strain A118	49.091	78.571	0.386
comEA	Staphylococcus aureus N315	44.262	87.143	0.386
comEA	Staphylococcus aureus MW2	44.262	87.143	0.386
comEA	Vibrio cholerae strain A1552	50.943	75.714	0.386
comEA	Vibrio cholerae C6706	50.943	75.714	0.386
comEA	Lactococcus lactis subsp. cremoris KW2	46.429	80	0.371
comE	Neisseria gonorrhoeae MS11	47.273	78.571	0.371
comE	Neisseria gonorrhoeae MS11	47.273	78.571	0.371
comE	Neisseria gonorrhoeae MS11	47.273	78.571	0.371
comE	Neisseria gonorrhoeae MS11	47.273	78.571	0.371
comEA/celA/cilE	Streptococcus mitis SK321	38.235	97.143	0.371

Detailed information NTG0468653