Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HPLT_RS00770 Genome accession   NC_017362
Coordinates   154132..155175 (+) Length   347 a.a.
NCBI ID   WP_000963129.1    Uniprot ID   -
Organism   Helicobacter pylori Lithuania75     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 149132..160175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPLT_RS00735 (HPLT_00765) - 149726..149944 (+) 219 WP_014534922.1 cytochrome c oxidase, cbb3-type, CcoQ subunit -
  HPLT_RS00740 (HPLT_00770) ccoP 149946..150824 (+) 879 WP_000346874.1 cytochrome-c oxidase, cbb3-type subunit III -
  HPLT_RS00745 (HPLT_00775) - 150835..151041 (+) 207 WP_000670508.1 DUF4006 family protein -
  HPLT_RS00750 (HPLT_00785) - 151142..151726 (+) 585 WP_001222019.1 hypothetical protein -
  HPLT_RS00755 (HPLT_00790) - 151738..152319 (+) 582 WP_000660402.1 hypothetical protein -
  HPLT_RS00760 - 152407..153174 (+) 768 WP_000506284.1 hypothetical protein -
  HPLT_RS00765 (HPLT_00800) - 153171..154034 (-) 864 WP_000626211.1 menaquinone biosynthesis family protein -
  HPLT_RS00770 (HPLT_00805) recA 154132..155175 (+) 1044 WP_000963129.1 recombinase RecA Machinery gene
  HPLT_RS00775 (HPLT_00810) eno 155187..156467 (+) 1281 WP_000955597.1 phosphopyruvate hydratase -
  HPLT_RS00780 (HPLT_00815) - 156460..156735 (+) 276 WP_000146233.1 hypothetical protein -
  HPLT_RS00785 (HPLT_00820) - 156753..157349 (+) 597 WP_041200800.1 AMIN domain-containing protein -
  HPLT_RS00790 (HPLT_00825) - 157354..157842 (+) 489 WP_001164320.1 shikimate kinase -
  HPLT_RS00795 (HPLT_00830) - 157863..158819 (+) 957 WP_000952298.1 PDC sensor domain-containing protein -
  HPLT_RS00800 (HPLT_00835) - 158816..159934 (-) 1119 WP_000022402.1 glycosyltransferase family 8 protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37685.40 Da        Isoelectric Point: 5.7176

>NTDB_id=46829 HPLT_RS00770 WP_000963129.1 154132..155175(+) (recA) [Helicobacter pylori Lithuania75]
MAIDEDKQKAISLAIKQIDKVFGKGALVRLGDKQVEKIDSISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHI
IAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDM
GDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIASLKQNEQHI
GNRAKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQGRENAKALLKEDKALANE
ITLKIKESIGSNEEIMPLPDEPLEEME

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=46829 HPLT_RS00770 WP_000963129.1 154132..155175(+) (recA) [Helicobacter pylori Lithuania75]
ATGGCAATAGATGAAGACAAACAAAAAGCGATTTCTTTAGCGATCAAACAAATTGATAAGGTTTTTGGCAAGGGGGCGTT
GGTGCGCCTTGGGGATAAGCAAGTAGAAAAGATTGACTCTATTTCTACAGGCTCGTTAGGGTTGGATCTGGCTTTAGGGA
TTGGGGGCGTTCCAAAGGGTAGGATCATTGAAATTTATGGGCCAGAGTCAAGCGGGAAGACCACTCTAAGCTTGCATATC
ATTGCAGAATGCCAAAAAAATGGCGGCGTGTGCGCGTTCATTGACGCTGAGCATGCCTTAGATGTGCATTATGCTAAGAG
GCTAGGCGTGGATACGGAAAATTTACTCGTTTCCCAACCTGATACAGGCGAGCAAGCTTTAGAGATTTTAGAAACGATCA
CAAGAAGTGGAGGGATTGATTTAGTGGTGGTGGATTCTGTAGCGGCCCTTACGCCTAAAGCGGAGATTGATGGGGATATG
GGCGATCAGCATGTGGGCTTGCAAGCAAGGCTTATGAGCCATGCGTTAAGGAAAATCACCGGTGTCTTGCACAAAATGAA
CACTACTCTCATTTTTATCAACCAAATCAGGATGAAGATTGGCATGATGGGTTATGGGAGTCCAGAGACCACAACCGGAG
GTAACGCTTTAAAATTCTATGCGAGCGTTAGGATTGATATTAGAAGAATCGCCTCTCTCAAGCAAAACGAACAGCATATC
GGTAACAGGGCTAAAGCCAAAGTGGTTAAAAATAAAGTCGCTCCGCCTTTTAGAGAAGCGGAATTTGACATCATGTTTGG
GGAGGGGATTTCTAAAGAGGGCGAAATCATTGATTATGGCGTGAAATTAGACATTGTGGATAAGAGCGGGGCATGGCTTA
GCTACCAGGATAAAAAGCTAGGGCAAGGCCGAGAAAACGCTAAAGCCCTATTGAAAGAAGATAAAGCCCTAGCGAATGAA
ATCACTCTTAAGATTAAAGAGAGTATTGGCTCTAATGAAGAGATCATGCCCTTACCTGATGAGCCTTTAGAAGAAATGGA
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Helicobacter pylori 26695

99.712

100

0.997
  recA Helicobacter pylori strain NCTC11637

99.135

100

0.991
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

78.963

94.524

0.746
  recA Neisseria gonorrhoeae MS11

66.769

93.66

0.625
  recA Neisseria gonorrhoeae MS11

66.769

93.66

0.625
  recA Neisseria gonorrhoeae strain FA1090

66.769

93.66

0.625
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.458

95.677

0.617
  recA Bacillus subtilis subsp. subtilis str. 168

65.231

93.66

0.611
  recA Acinetobacter baumannii D1279779

63.914

94.236

0.602
  recA Ralstonia pseudosolanacearum GMI1000

62.202

96.83

0.602
  recA Acinetobacter baylyi ADP1

63.609

94.236

0.599
  recA Pseudomonas stutzeri DSM 10701

60.234

98.559

0.594
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.012

96.83

0.591
  recA Vibrio cholerae strain A1552

61.012

96.83

0.591
  recA Glaesserella parasuis strain SC1401

60.671

94.524

0.573
  recA Streptococcus pneumoniae Rx1

55.84

100

0.565
  recA Streptococcus pneumoniae D39

55.84

100

0.565
  recA Streptococcus pneumoniae R6

55.84

100

0.565
  recA Streptococcus pneumoniae TIGR4

55.84

100

0.565
  recA Latilactobacillus sakei subsp. sakei 23K

54.622

100

0.562
  recA Streptococcus pyogenes NZ131

57.576

95.101

0.548
  recA Lactococcus lactis subsp. cremoris KW2

57.751

94.813

0.548
  recA Streptococcus mitis SK321

57.447

94.813

0.545
  recA Streptococcus mitis NCTC 12261

57.447

94.813

0.545
  recA Streptococcus mutans UA159

55.988

96.254

0.539
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.442

93.948

0.53

Multiple sequence alignment