Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HZY77_RS15295 Genome accession   NZ_CP059257
Coordinates   3099918..3100952 (-) Length   344 a.a.
NCBI ID   WP_296820929.1    Uniprot ID   A0A7L5YIN4
Organism   MAG: Thiobacillus sp. isolate SSC5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3094918..3105952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZY77_RS15280 (HZY77_15125) - 3096625..3097068 (+) 444 WP_296816605.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  HZY77_RS15285 (HZY77_15130) - 3097672..3099357 (+) 1686 WP_296816608.1 O-antigen ligase family protein -
  HZY77_RS15290 (HZY77_15135) recX 3099485..3099934 (-) 450 WP_296816611.1 recombination regulator RecX -
  HZY77_RS15295 (HZY77_15140) recA 3099918..3100952 (-) 1035 WP_296820929.1 recombinase RecA Machinery gene
  HZY77_RS15300 (HZY77_15145) - 3101162..3102058 (+) 897 WP_296816614.1 WYL domain-containing protein -
  HZY77_RS15305 (HZY77_15150) - 3102098..3102595 (-) 498 WP_296816617.1 CinA family protein -
  HZY77_RS15310 (HZY77_15155) - 3102583..3103062 (-) 480 WP_296816620.1 phosphatidylglycerophosphatase A -
  HZY77_RS15315 (HZY77_15160) thiL 3103052..3104005 (-) 954 WP_296816623.1 thiamine-phosphate kinase -
  HZY77_RS15320 (HZY77_15165) nusB 3104052..3104504 (-) 453 WP_296816626.1 transcription antitermination factor NusB -
  HZY77_RS15325 (HZY77_15170) ribH 3104506..3104976 (-) 471 WP_296634652.1 6,7-dimethyl-8-ribityllumazine synthase -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 36946.96 Da        Isoelectric Point: 5.0541

>NTDB_id=468189 HZY77_RS15295 WP_296820929.1 3099918..3100952(-) (recA) [MAG: Thiobacillus sp. isolate SSC5]
MAEDKSKALAAALGQIEKQFGKGSVMRLGDHDVSRDIQAVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGKTTLTLQVI
AEMQKMGGTAAFIDAEHALDPVYAQXLGVDVDNLLVSQPDTGEQALEIADMLVRSGSVDVVVVDSVAALTPKAEIEGEMG
DSHMGLQARLMSQALRKLTANIKRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKKGDEIIGN
ETKVKVVKNKVSPPFKEAYFDILYGQGISREGEIIELGVAHKLVDKSGAWYAYNGEKIGQGKDNAREFLKEHPEIAHEIE
AKIRAAVGVNNPGAMIEDEDEVEA

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=468189 HZY77_RS15295 WP_296820929.1 3099918..3100952(-) (recA) [MAG: Thiobacillus sp. isolate SSC5]
TTGGCAGAAGACAAATCGAAGGCGCTCGCCGCCGCGCTCGGCCAGATCGAAAAGCAGTTCGGCAAGGGTTCGGTCATGCG
CCTGGGCGACCATGACGTCTCGCGCGACATCCAGGCCGTCTCCACCGGTTCGCTTGGCCTCGACATCGCGCTCGGCGTCG
GCGGCCTGCCGCGCGGCCGCGTCATCGAGATCTACGGCCCGGAATCATCCGGCAAGACCACGCTCACGCTGCAGGTCATT
GCCGAAATGCAGAAAATGGGCGGCACCGCCGCCTTCATCGACGCCGAACACGCGCTCGACCCGGTCTACGCGCAANAGCT
CGGCGTCGACGTCGACAACCTGCTGGTCTCGCAGCCCGACACCGGCGAACAGGCGCTGGAAATCGCCGACATGCTGGTGC
GCTCCGGCTCGGTCGACGTGGTCGTGGTCGACTCGGTCGCCGCGCTGACGCCCAAGGCCGAAATCGAAGGCGAAATGGGC
GACTCGCACATGGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTCAGGAAGCTTACCGCCAACATCAAGCGCACCAACAC
GCTCGTCATCTTCATCAACCAGATCCGAATGAAGATCGGCGTCATGTTCGGCAACCCCGAGACCACCACCGGCGGCAACG
CGCTGAAGTTCTACGCCAGCGTACGCCTCGACATCCGCCGCACCGGCGCGATCAAGAAGGGCGACGAAATCATCGGCAAC
GAGACCAAGGTCAAGGTCGTCAAGAACAAGGTGTCGCCGCCGTTCAAGGAAGCCTACTTCGACATCCTCTACGGCCAGGG
CATCTCGCGCGAGGGCGAGATCATCGAACTCGGCGTCGCCCACAAGCTGGTCGACAAGTCCGGTGCCTGGTACGCTTACA
ACGGCGAGAAGATCGGCCAGGGCAAGGACAACGCGCGCGAGTTCCTCAAGGAGCACCCCGAGATCGCCCACGAAATCGAG
GCCAAGATCCGCGCCGCCGTCGGCGTCAACAACCCGGGCGCGATGATCGAGGACGAGGATGAAGTCGAAGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

79.062

93.023

0.735
  recA Pseudomonas stutzeri DSM 10701

76.133

96.221

0.733
  recA Acinetobacter baumannii D1279779

72.886

99.709

0.727
  recA Glaesserella parasuis strain SC1401

70.977

100

0.718
  recA Vibrio cholerae strain A1552

75.309

94.186

0.709
  recA Vibrio cholerae O1 biovar El Tor strain E7946

75.309

94.186

0.709
  recA Acinetobacter baylyi ADP1

75.309

94.186

0.709
  recA Neisseria gonorrhoeae MS11

73.252

95.64

0.701
  recA Neisseria gonorrhoeae strain FA1090

73.252

95.64

0.701
  recA Neisseria gonorrhoeae MS11

73.252

95.64

0.701
  recA Helicobacter pylori strain NCTC11637

65.385

98.256

0.642
  recA Helicobacter pylori 26695

64.793

98.256

0.637
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.972

95.058

0.637
  recA Bacillus subtilis subsp. subtilis str. 168

65.663

96.512

0.634
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.152

95.93

0.625
  recA Latilactobacillus sakei subsp. sakei 23K

62.651

96.512

0.605
  recA Streptococcus pneumoniae R6

62.424

95.93

0.599
  recA Streptococcus pneumoniae TIGR4

62.424

95.93

0.599
  recA Streptococcus pneumoniae Rx1

62.424

95.93

0.599
  recA Streptococcus pneumoniae D39

62.424

95.93

0.599
  recA Streptococcus mutans UA159

61.562

96.802

0.596
  recA Streptococcus pyogenes NZ131

61.747

96.512

0.596
  recA Streptococcus mitis NCTC 12261

61.515

95.93

0.59
  recA Streptococcus mitis SK321

61.212

95.93

0.587
  recA Lactococcus lactis subsp. cremoris KW2

61.212

95.93

0.587
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.027

96.221

0.587