Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   H0G71_RS07175 Genome accession   NZ_CP059140
Coordinates   1425429..1426529 (-) Length   366 a.a.
NCBI ID   WP_013086050.1    Uniprot ID   A0A2A7RJK8
Organism   Lactobacillus crispatus strain B4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1420429..1431529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0G71_RS07160 (H0G71_07160) - 1421717..1422379 (+) 663 WP_005718635.1 YigZ family protein -
  H0G71_RS07165 (H0G71_07165) - 1422414..1423571 (-) 1158 WP_148238404.1 glycosyltransferase family 4 protein -
  H0G71_RS07170 (H0G71_07170) rny 1423676..1425313 (-) 1638 WP_180808165.1 ribonuclease Y -
  H0G71_RS07175 (H0G71_07175) recA 1425429..1426529 (-) 1101 WP_013086050.1 recombinase RecA Machinery gene
  H0G71_RS07180 (H0G71_07180) pgsA 1426720..1427280 (-) 561 WP_005718631.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  H0G71_RS07185 (H0G71_07185) - 1427298..1428377 (-) 1080 WP_180808166.1 RodZ family helix-turn-helix domain-containing protein -
  H0G71_RS07190 (H0G71_07190) ymfI 1428445..1429173 (-) 729 WP_035443121.1 elongation factor P 5-aminopentanone reductase -
  H0G71_RS07195 (H0G71_07195) - 1429187..1430431 (-) 1245 WP_013086046.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 39636.10 Da        Isoelectric Point: 6.3288

>NTDB_id=467293 H0G71_RS07175 WP_013086050.1 1425429..1426529(-) (recA) [Lactobacillus crispatus strain B4]
MAKDEKQAALDAALKKIEKNFGKGAVMRMGEKADTQISTVPTGSLALDAAIGVGGYPRGRIIEVYGPESSGKTTVALHAV
AEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMG
DAHVGLQARLMSQALRKLSGNISKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSGDVLGN
RVKIKVVKNKVAPPFKVAEVDIMYGKGISQSGELLDMAADKDIIDKAGSWYSYKSDRIGQGRENAKKYLEEHPDIYQDIQ
KQVRQAYGIDEKSIADREDPEKIKEKREEAKTEKEAATDKKSDQAK

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=467293 H0G71_RS07175 WP_013086050.1 1425429..1426529(-) (recA) [Lactobacillus crispatus strain B4]
ATGGCCAAAGACGAAAAACAGGCTGCTTTAGATGCAGCGCTTAAAAAAATCGAAAAGAATTTCGGTAAGGGTGCTGTAAT
GCGGATGGGCGAAAAAGCTGATACGCAAATTTCAACAGTGCCAACAGGTTCATTAGCTTTAGATGCTGCTATCGGTGTAG
GTGGATATCCTCGTGGTCGTATTATTGAAGTTTATGGCCCAGAATCATCTGGTAAGACTACTGTAGCCCTTCATGCTGTA
GCTGAGGTACAAAAGCGTGGTGGTACTGCAGCTTATATTGATGCAGAGAATGCGATGGACCCTGCTTATGCTGAAGCTTT
AGGTGTAGATATTGATTCATTAATTTTGTCACAACCTAATACTGGTGAAGAAGGTTTGCAAATCGCTGATACTTTGATTT
CCAGTGGGGCAATTGACATTGTAGTAGTCGACTCTGTTGCTGCCTTAGTACCACGAGCAGAAATTGAAGGCGAGATGGGG
GATGCCCATGTTGGTTTACAAGCGAGATTAATGAGTCAAGCTTTGCGTAAGCTATCAGGTAATATTTCTAAAACCAAAAC
TATTGCCATCTTTATTAACCAGATTCGTGAAAAAGTTGGGGTAATGTTTGGTAATCCTGAAACTACCCCAGGTGGTCGTG
CTCTTAAGTTTTACTCAACTATTAGATTGGAAGTAAGAAGAGCTGAACAGATTAAGCAATCAGGAGATGTTCTTGGTAAC
AGAGTTAAAATTAAAGTTGTTAAGAACAAGGTTGCTCCACCATTTAAGGTGGCAGAAGTAGACATTATGTACGGTAAGGG
AATTTCACAAAGTGGTGAATTACTGGACATGGCTGCTGATAAGGACATTATCGATAAAGCAGGTTCTTGGTACTCTTACA
AGAGTGATCGAATTGGTCAGGGACGTGAGAATGCTAAGAAGTATCTAGAAGAGCATCCAGATATTTATCAAGATATCCAA
AAGCAAGTGCGTCAAGCTTACGGGATTGATGAAAAGTCAATTGCTGATCGTGAAGATCCAGAAAAGATCAAGGAGAAGCG
CGAAGAAGCCAAGACAGAAAAAGAAGCTGCTACAGATAAAAAGTCTGATCAAGCTAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A7RJK8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

81.269

90.437

0.735
  recA Bacillus subtilis subsp. subtilis str. 168

73.333

90.164

0.661
  recA Streptococcus pneumoniae D39

65.556

98.361

0.645
  recA Streptococcus pneumoniae R6

65.556

98.361

0.645
  recA Streptococcus pneumoniae TIGR4

65.556

98.361

0.645
  recA Streptococcus pneumoniae Rx1

65.556

98.361

0.645
  recA Streptococcus mutans UA159

64.11

99.727

0.639
  recA Streptococcus mitis NCTC 12261

67.544

93.443

0.631
  recA Streptococcus pyogenes NZ131

68.997

89.891

0.62
  recA Streptococcus mitis SK321

68.389

89.891

0.615
  recA Lactococcus lactis subsp. cremoris KW2

65.476

91.803

0.601
  recA Neisseria gonorrhoeae MS11

59.078

94.809

0.56
  recA Neisseria gonorrhoeae MS11

59.078

94.809

0.56
  recA Neisseria gonorrhoeae strain FA1090

59.078

94.809

0.56
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.112

92.623

0.538
  recA Acinetobacter baumannii D1279779

56.936

94.536

0.538
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.756

89.617

0.536
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.062

88.251

0.53
  recA Acinetobacter baylyi ADP1

59.627

87.978

0.525
  recA Helicobacter pylori 26695

55.848

93.443

0.522
  recA Helicobacter pylori strain NCTC11637

55.848

93.443

0.522
  recA Pseudomonas stutzeri DSM 10701

59.19

87.705

0.519
  recA Glaesserella parasuis strain SC1401

53.276

95.902

0.511
  recA Vibrio cholerae O1 biovar El Tor strain E7946

57.453

87.978

0.505
  recA Vibrio cholerae strain A1552

57.453

87.978

0.505
  recA Ralstonia pseudosolanacearum GMI1000

58.466

85.519

0.5