Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   H0Z12_RS06290 Genome accession   NZ_CP059084
Coordinates   1036450..1037520 (+) Length   356 a.a.
NCBI ID   WP_014594423.1    Uniprot ID   A0AAJ3YHV4
Organism   Pantoea ananatis strain OC5a     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1031450..1042520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0Z12_RS06270 (H0Z12_06270) mltB 1033306..1034388 (+) 1083 WP_072138253.1 lytic murein transglycosylase B -
  H0Z12_RS06275 (H0Z12_06275) - 1034464..1034799 (+) 336 WP_014605175.1 zinc ribbon domain-containing protein YjdM -
  H0Z12_RS06280 (H0Z12_06280) tam 1034983..1035759 (+) 777 WP_207806537.1 trans-aconitate 2-methyltransferase -
  H0Z12_RS06285 (H0Z12_06285) pncC 1035860..1036354 (+) 495 WP_072138252.1 nicotinamide-nucleotide amidase -
  H0Z12_RS06290 (H0Z12_06290) recA 1036450..1037520 (+) 1071 WP_014594423.1 recombinase RecA Machinery gene
  H0Z12_RS06295 (H0Z12_06295) - 1037634..1038146 (+) 513 WP_014594422.1 regulatory protein RecX -
  H0Z12_RS06300 (H0Z12_06300) alaS 1038278..1040905 (+) 2628 WP_014605176.1 alanine--tRNA ligase -
  H0Z12_RS06305 (H0Z12_06305) csrA 1041156..1041341 (+) 186 WP_006120718.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 37934.47 Da        Isoelectric Point: 5.0465

>NTDB_id=467171 H0Z12_RS06290 WP_014594423.1 1036450..1037520(+) (recA) [Pantoea ananatis strain OC5a]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPEASGKTTLTLQV
IAAAQRKGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDNVVG
SETRVKVVKNKIAAPFKQAEFQIMYGEGINTFGELVDLGVKHKLIEKAGAWYSYKGDKIGQGKANAGNFLKENAAVADEL
DIKLREMLLNGGDQNIAADVAGNDVEKAASEANEDY

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=467171 H0Z12_RS06290 WP_014594423.1 1036450..1037520(+) (recA) [Pantoea ananatis strain OC5a]
ATGGCAATTGATGAAAACAAACAGAAGGCTTTAGCTGCCGCGCTCGGCCAGATTGAGAAGCAATTTGGTAAAGGCTCCAT
CATGCGCTTGGGTGAAGACCGCTCAATGGATGTGGAAACCATTTCAACGGGTTCTCTGTCACTGGATATCGCATTAGGTG
CGGGTGGTTTACCGATGGGGCGTATCGTTGAGATCTACGGCCCAGAGGCCTCAGGTAAAACGACACTGACACTTCAGGTT
ATTGCCGCCGCGCAGCGTAAGGGCAAAACCTGTGCCTTTATCGATGCCGAGCACGCACTGGATCCCATCTATGCTAAGAA
ACTGGGCGTAGATATCGACAATCTGCTGTGTTCACAGCCGGATACCGGTGAGCAGGCCCTGGAAATTTGTGATGCGCTGG
CCCGCTCTGGTGCCGTTGACGTCATTATCGTTGACTCCGTAGCTGCACTGACGCCAAAAGCCGAAATCGAAGGTGAAATC
GGTGACTCACACATGGGCCTGGCGGCACGTATGATGAGCCAGGCAATGCGTAAGCTGGCGGGTAACCTGAAGCAGTCAAA
TACGCTGCTGATCTTCATCAACCAGATTCGTATGAAGATTGGTGTGATGTTCGGTAACCCGGAAACCACTACCGGTGGTA
ACGCGCTGAAGTTCTACGCTTCTGTTCGCCTTGATATTCGCCGTATCGGTGCGATTAAAGAGGGTGACAACGTGGTGGGT
AGTGAAACGCGCGTTAAAGTCGTTAAGAACAAAATTGCAGCACCATTTAAACAGGCTGAGTTCCAGATCATGTACGGCGA
AGGCATTAACACCTTCGGTGAGCTGGTGGATCTTGGCGTGAAGCACAAGCTGATTGAAAAAGCCGGTGCATGGTACAGCT
ATAAAGGCGATAAGATCGGTCAGGGCAAGGCAAACGCGGGCAACTTCCTCAAAGAAAATGCCGCGGTGGCCGACGAGCTT
GATATCAAACTGCGTGAAATGCTGCTTAACGGTGGCGATCAAAACATCGCGGCGGACGTTGCAGGCAACGACGTTGAGAA
GGCGGCGAGCGAAGCCAACGAAGATTATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

82.235

98.034

0.806
  recA Vibrio cholerae O1 biovar El Tor strain E7946

82.235

98.034

0.806
  recA Pseudomonas stutzeri DSM 10701

71.47

97.472

0.697
  recA Acinetobacter baylyi ADP1

71.006

94.944

0.674
  recA Acinetobacter baumannii D1279779

72.424

92.697

0.671
  recA Glaesserella parasuis strain SC1401

67.236

98.596

0.663
  recA Neisseria gonorrhoeae MS11

66.369

94.382

0.626
  recA Neisseria gonorrhoeae MS11

66.369

94.382

0.626
  recA Neisseria gonorrhoeae strain FA1090

66.369

94.382

0.626
  recA Ralstonia pseudosolanacearum GMI1000

69.775

87.36

0.61
  recA Helicobacter pylori strain NCTC11637

62.691

91.854

0.576
  recA Helicobacter pylori 26695

62.385

91.854

0.573
  recA Lactococcus lactis subsp. cremoris KW2

62.539

90.73

0.567
  recA Streptococcus mitis NCTC 12261

62.229

90.73

0.565
  recA Streptococcus mitis SK321

62.229

90.73

0.565
  recA Streptococcus pneumoniae D39

61.92

90.73

0.562
  recA Streptococcus pneumoniae R6

61.92

90.73

0.562
  recA Streptococcus pneumoniae TIGR4

61.92

90.73

0.562
  recA Streptococcus pneumoniae Rx1

61.92

90.73

0.562
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.696

89.607

0.562
  recA Latilactobacillus sakei subsp. sakei 23K

61.538

91.292

0.562
  recA Streptococcus mutans UA159

61.231

91.292

0.559
  recA Streptococcus pyogenes NZ131

61.231

91.292

0.559
  recA Bacillus subtilis subsp. subtilis str. 168

61.994

90.169

0.559
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.337

93.258

0.553
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.306

89.045

0.528