Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   H0S58_RS08155 Genome accession   NZ_CP059079
Coordinates   1741835..1742878 (+) Length   347 a.a.
NCBI ID   WP_053580130.1    Uniprot ID   A0A0M3RM40
Organism   Acinetobacter sp. TTH0-4 strain 1BD1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1736835..1747878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0S58_RS08120 (H0S58_08120) rraA 1737117..1737629 (-) 513 WP_053580137.1 ribonuclease E activity regulator RraA -
  H0S58_RS08125 (H0S58_08125) - 1737642..1738307 (-) 666 WP_195726244.1 NAD(P)H-binding protein -
  H0S58_RS08130 (H0S58_08130) rpsT 1738523..1738789 (+) 267 WP_053580135.1 30S ribosomal protein S20 -
  H0S58_RS08135 (H0S58_08135) - 1738906..1739643 (-) 738 WP_195726245.1 histidine phosphatase family protein -
  H0S58_RS08140 (H0S58_08140) - 1739700..1740557 (-) 858 WP_195726246.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  H0S58_RS08145 (H0S58_08145) - 1740571..1741257 (+) 687 WP_195726247.1 HAD hydrolase-like protein -
  H0S58_RS08150 (H0S58_08150) - 1741250..1741690 (+) 441 WP_053580131.1 RNA-binding S4 domain-containing protein -
  H0S58_RS08155 (H0S58_08155) recA 1741835..1742878 (+) 1044 WP_053580130.1 recombinase RecA Machinery gene
  H0S58_RS08160 (H0S58_08160) - 1742964..1743566 (+) 603 WP_195726248.1 regulatory protein RecX -
  H0S58_RS08170 (H0S58_08170) - 1744133..1744963 (+) 831 WP_053580128.1 YbgF trimerization domain-containing protein -
  H0S58_RS08175 (H0S58_08175) lpxA 1745010..1745798 (-) 789 WP_092720812.1 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase -
  H0S58_RS08180 (H0S58_08180) fabZ 1745795..1746280 (-) 486 WP_171250395.1 3-hydroxyacyl-ACP dehydratase FabZ -
  H0S58_RS08185 (H0S58_08185) lpxD 1746287..1747354 (-) 1068 WP_195726249.1 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase -
  H0S58_RS08190 (H0S58_08190) - 1747358..1747855 (-) 498 WP_092720814.1 OmpH family outer membrane protein -

Sequence


Protein


Download         Length: 347 a.a.        Molecular weight: 37642.26 Da        Isoelectric Point: 5.1559

>NTDB_id=467045 H0S58_RS08155 WP_053580130.1 1741835..1742878(+) (recA) [Acinetobacter sp. TTH0-4 strain 1BD1]
MDDNKSKALNAALSQIEKQFGKNTVMRLGDNTVLAVEAVSTGSLTLDIALGIGGLPKGRIVEIYGPESSGKTTMTLQAIA
ECQKAGGTCAFIDAEHALDPQYARKLGVDLDNLLVSQPDHGEQALEIADMLVRSGAVDMIVVDSVAALTPRAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIVGSE
TRVKVVKNKMAPPFKEALFQILYGKGVNQLGELVDLAVAQELVQKAGAWYSYQGNKIGQGKNNVIRHLEENPQIAQELDR
LIREKLLTPVTTPIEEKDEIEPDLLDA

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=467045 H0S58_RS08155 WP_053580130.1 1741835..1742878(+) (recA) [Acinetobacter sp. TTH0-4 strain 1BD1]
ATGGATGATAATAAAAGTAAGGCGCTCAATGCTGCCTTAAGCCAAATTGAAAAACAATTTGGTAAAAACACAGTAATGCG
TCTAGGTGATAATACCGTACTGGCTGTTGAAGCCGTCTCTACGGGTTCTTTAACACTGGATATTGCACTCGGTATTGGTG
GCTTACCTAAAGGTCGTATCGTTGAAATTTACGGGCCTGAATCCTCTGGTAAAACCACAATGACTTTGCAAGCGATTGCA
GAATGTCAAAAAGCGGGTGGTACATGCGCTTTCATCGATGCCGAACATGCGCTTGATCCACAATATGCACGTAAGCTTGG
TGTAGACCTTGATAACCTTTTAGTTTCTCAACCAGACCACGGTGAGCAGGCACTTGAAATTGCCGACATGTTAGTACGCT
CTGGCGCTGTCGATATGATTGTTGTCGATTCCGTTGCTGCCCTTACCCCTCGTGCAGAAATTGAAGGTGAAATGGGCGAC
TCACACATGGGACTACAGGCCCGTTTGATGAGTCAGGCATTACGTAAAATTACTGGTAATGCAAAACGCTCAAACTGTAT
GGTGATCTTTATTAACCAAATTCGTATGAAGATTGGTGTAATGTTTGGTAGCCCTGAAACAACAACTGGTGGTAACGCAC
TTAAATTCTACGCTTCAGTACGTTTAGATATCCGTCGTATTGGTCAAGTGAAAGAAGGTGATGAAATTGTCGGTTCTGAA
ACACGTGTTAAAGTCGTGAAGAATAAAATGGCACCTCCATTCAAAGAGGCGTTATTCCAAATTCTCTATGGTAAAGGTGT
TAATCAACTCGGTGAACTGGTTGATCTTGCTGTGGCTCAAGAACTGGTACAAAAAGCAGGTGCATGGTATTCATATCAAG
GCAATAAAATTGGTCAAGGTAAAAACAACGTGATTCGTCACCTTGAGGAAAATCCTCAAATTGCACAAGAACTTGATCGC
CTTATTCGCGAGAAACTCTTGACGCCTGTGACTACGCCAATTGAAGAAAAAGATGAAATCGAACCTGATTTACTAGACGC
TTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A0M3RM40

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

89.685

100

0.902

  recA Acinetobacter baumannii D1279779

89.884

99.712

0.896

  recA Pseudomonas stutzeri DSM 10701

73.775

100

0.738

  recA Vibrio cholerae strain A1552

74.468

94.813

0.706

  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.468

94.813

0.706

  recA Glaesserella parasuis strain SC1401

71.914

93.372

0.671

  recA Neisseria gonorrhoeae MS11

66.279

99.135

0.657

  recA Neisseria gonorrhoeae MS11

66.279

99.135

0.657

  recA Neisseria gonorrhoeae strain FA1090

66.279

99.135

0.657

  recA Ralstonia pseudosolanacearum GMI1000

69.207

94.524

0.654

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.35

95.389

0.614

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.609

94.236

0.599

  recA Helicobacter pylori strain NCTC11637

62.08

94.236

0.585

  recA Helicobacter pylori 26695

61.774

94.236

0.582

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.125

92.219

0.582

  recA Streptococcus pyogenes NZ131

60.671

94.524

0.573

  recA Streptococcus pneumoniae D39

61.043

93.948

0.573

  recA Streptococcus pneumoniae Rx1

61.043

93.948

0.573

  recA Streptococcus pneumoniae R6

61.043

93.948

0.573

  recA Streptococcus pneumoniae TIGR4

61.043

93.948

0.573

  recA Streptococcus mutans UA159

60.923

93.66

0.571

  recA Streptococcus mitis NCTC 12261

60.991

93.084

0.568

  recA Bacillus subtilis subsp. subtilis str. 168

61.371

92.507

0.568

  recA Streptococcus mitis SK321

60.681

93.084

0.565

  recA Latilactobacillus sakei subsp. sakei 23K

59.502

92.507

0.55

  recA Lactococcus lactis subsp. cremoris KW2

57.895

93.084

0.539