Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SLUG_RS08080 Genome accession   NC_017353
Coordinates   1688464..1689510 (-) Length   348 a.a.
NCBI ID   WP_002478267.1    Uniprot ID   A0A853UZV5
Organism   Staphylococcus lugdunensis N920143     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1683464..1694510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SLUG_RS08065 (SLUG_16080) - 1685118..1685906 (-) 789 WP_014533314.1 TIGR00282 family metallophosphoesterase -
  SLUG_RS08070 (SLUG_16090) - 1686062..1686280 (+) 219 WP_002459257.1 hypothetical protein -
  SLUG_RS08075 (SLUG_16100) rny 1686636..1688195 (-) 1560 WP_014533315.1 ribonuclease Y -
  SLUG_RS08080 (SLUG_16110) recA 1688464..1689510 (-) 1047 WP_002478267.1 recombinase RecA Machinery gene
  SLUG_RS08085 (SLUG_16120) - 1689683..1690825 (-) 1143 WP_002478268.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  SLUG_RS08090 (SLUG_16130) pgsA 1690996..1691571 (-) 576 WP_002459261.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  SLUG_RS08095 (SLUG_16140) - 1691593..1691985 (-) 393 WP_002459262.1 helix-turn-helix domain-containing protein -
  SLUG_RS08100 (SLUG_16150) - 1692007..1692840 (-) 834 WP_002459263.1 YmfK family protein -
  SLUG_RS08105 (SLUG_16160) ymfI 1692938..1693642 (-) 705 WP_002459264.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37749.69 Da        Isoelectric Point: 5.1049

>NTDB_id=46690 SLUG_RS08080 WP_002478267.1 1688464..1689510(-) (recA) [Staphylococcus lugdunensis N920143]
MDNDRQKALDTVIKNMEKSFGKGAVMKLGDNKGRRVSSVSTGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQKNGGIAAFIDAEHALDPEYAAALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFKVAEVDIMYGQGISKEGELIDLGVEHDIVDKSGAWYSYNGDRMGQGKENVKTYLKENPEVRDDIDR
KLREKLGIFDGDVEEKEAKAPESLFDEE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=46690 SLUG_RS08080 WP_002478267.1 1688464..1689510(-) (recA) [Staphylococcus lugdunensis N920143]
TTGGATAATGATCGTCAAAAAGCGCTAGATACTGTAATTAAAAATATGGAAAAATCATTCGGTAAAGGTGCCGTAATGAA
ATTAGGGGATAATAAAGGCCGTCGCGTATCTAGTGTATCTACTGGATCAGTGACATTAGATAATGCTTTAGGAGTTGGTG
GATATCCTAAAGGAAGAATTATAGAAATATATGGTCCTGAAAGTTCAGGTAAAACGACCGTTGCATTACATGCAATTGCC
GAAGTTCAAAAAAATGGTGGTATTGCAGCTTTTATTGATGCTGAGCATGCGTTAGATCCTGAATATGCAGCTGCTTTAGG
TGTAGATATTGATAACTTATATCTTTCTCAACCAGATCATGGTGAACAAGGTTTAGAAATCGCTGAAGCCTTTGTACGTA
GTGGAGCTGTTGATATTGTAGTTGTGGACTCAGTTGCAGCTTTAACACCTAAAGCTGAAATTGAAGGAGAAATGGGAGAT
ACGCATGTAGGTTTACAAGCTCGCTTGATGTCTCAAGCATTACGTAAGCTTTCAGGTGCAATTTCTAAATCAAATACGAC
AGCCATTTTCATCAATCAAATTCGTGAAAAGGTTGGCGTAATGTTTGGTAATCCTGAAACAACACCTGGTGGTCGTGCAC
TTAAATTTTATAGTTCAGTACGTTTAGAAGTTCGTCGTGCAGAACAATTAAAGCAAGGTCAAGACATCGTTGGTAATAGA
ACTAAAATCAAAGTTGTTAAAAATAAAGTTGCGCCGCCATTTAAAGTTGCAGAAGTAGATATTATGTATGGTCAAGGAAT
CTCTAAAGAGGGAGAACTCATTGATTTAGGTGTTGAACATGATATTGTTGATAAATCAGGTGCTTGGTACTCATACAATG
GAGATAGAATGGGCCAAGGTAAAGAAAATGTCAAAACTTATCTAAAAGAAAATCCAGAAGTAAGAGATGATATTGATCGT
AAACTAAGAGAAAAATTAGGTATTTTTGATGGTGATGTTGAAGAAAAAGAAGCTAAAGCACCAGAATCTCTATTTGATGA
AGAATGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A853UZV5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.38

93.678

0.716
  recA Latilactobacillus sakei subsp. sakei 23K

71.951

94.253

0.678
  recA Streptococcus mutans UA159

65.429

100

0.658
  recA Streptococcus mitis SK321

66.181

98.563

0.652
  recA Streptococcus pyogenes NZ131

68.997

94.54

0.652
  recA Streptococcus mitis NCTC 12261

65.988

98.851

0.652
  recA Streptococcus pneumoniae R6

67.267

95.69

0.644
  recA Streptococcus pneumoniae Rx1

67.267

95.69

0.644
  recA Streptococcus pneumoniae D39

67.267

95.69

0.644
  recA Streptococcus pneumoniae TIGR4

67.267

95.69

0.644
  recA Lactococcus lactis subsp. cremoris KW2

66.767

95.115

0.635
  recA Acinetobacter baumannii D1279779

63.218

100

0.632
  recA Neisseria gonorrhoeae strain FA1090

63.112

99.713

0.629
  recA Neisseria gonorrhoeae MS11

63.112

99.713

0.629
  recA Neisseria gonorrhoeae MS11

63.112

99.713

0.629
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.653

94.54

0.621
  recA Vibrio cholerae strain A1552

65.951

93.678

0.618
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.951

93.678

0.618
  recA Helicobacter pylori 26695

65.244

94.253

0.615
  recA Acinetobacter baylyi ADP1

65.644

93.678

0.615
  recA Helicobacter pylori strain NCTC11637

64.939

94.253

0.612
  recA Ralstonia pseudosolanacearum GMI1000

65.495

89.943

0.589
  recA Pseudomonas stutzeri DSM 10701

61.963

93.678

0.58
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.027

95.115

0.58
  recA Glaesserella parasuis strain SC1401

61.18

92.529

0.566
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.025

90.805

0.563

Multiple sequence alignment