Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   H0O22_RS08135 Genome accession   NZ_CP059060
Coordinates   1422468..1423580 (+) Length   370 a.a.
NCBI ID   WP_185186194.1    Uniprot ID   A0A7G7KLR0
Organism   Synechococcus sp. LTW-R     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1417468..1428580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0O22_RS08110 (H0O22_08110) - 1418179..1418646 (+) 468 WP_185186190.1 NAD(P)H-quinone oxidoreductase subunit N -
  H0O22_RS08115 (H0O22_08115) - 1418643..1419659 (+) 1017 WP_185186191.1 LdpA C-terminal domain-containing domain -
  H0O22_RS08120 (H0O22_08120) - 1419676..1421346 (+) 1671 WP_185186192.1 AAA family ATPase -
  H0O22_RS08130 (H0O22_08130) - 1421567..1422316 (+) 750 WP_185186193.1 HAD family hydrolase -
  H0O22_RS08135 (H0O22_08135) recA 1422468..1423580 (+) 1113 WP_185186194.1 recombinase RecA Machinery gene
  H0O22_RS08140 (H0O22_08140) - 1423661..1424005 (-) 345 WP_185186195.1 DUF1815 family protein -
  H0O22_RS08145 (H0O22_08145) - 1424085..1424327 (-) 243 WP_185186196.1 DUF2839 domain-containing protein -
  H0O22_RS08150 (H0O22_08150) - 1424374..1425810 (-) 1437 WP_185186197.1 helicase -
  H0O22_RS08155 (H0O22_08155) - 1425852..1426712 (+) 861 WP_185186198.1 prephenate/arogenate dehydrogenase -
  H0O22_RS08160 (H0O22_08160) crtD 1426709..1428211 (-) 1503 WP_185186199.1 C-3',4' desaturase CrtD -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39358.78 Da        Isoelectric Point: 6.7382

>NTDB_id=466889 H0O22_RS08135 WP_185186194.1 1422468..1423580(+) (recA) [Synechococcus sp. LTW-R]
MPADDKSTSASSPERDKALGLVLNQIERNFGKGSIMRLGDASRMRIETTPTGALTLDLALGGGYPKGRVVEVYGPESSGK
TTLTLHAIAEVQRRGGVAAFVDAEHALDPVYAAALGVDIENLLVSQPDTGEMALEIVDQLVRSAAVDIVVVDSVAALTPR
SEIEGEMGDLAVGSQARLMSQAMRKITGNIGKSGCTVIFLNQLRQKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLK
RGTEEFGIRAKVKVAKNKVAPPFRIAEFDILFGRGISTVGCLLDLAEEHGVVVRKGAWYSYEGDNIGQGRDNTITWLEQN
STEKEAIEVKVRQKLSETTDSLKPVATAAAKLAASGSASSSKEQALPAAS

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=466889 H0O22_RS08135 WP_185186194.1 1422468..1423580(+) (recA) [Synechococcus sp. LTW-R]
ATGCCTGCCGACGACAAGAGCACCAGCGCCTCCAGCCCTGAGCGGGACAAGGCCCTTGGCCTGGTGCTGAACCAAATCGA
GCGCAACTTTGGCAAGGGCTCGATCATGCGCCTGGGGGATGCCTCGCGCATGCGGATCGAGACCACCCCCACCGGCGCCC
TCACCCTCGACCTCGCCCTCGGCGGCGGCTATCCCAAAGGACGGGTCGTTGAGGTCTACGGCCCGGAGAGCTCGGGCAAA
ACAACCCTCACCCTGCACGCCATTGCCGAAGTGCAGCGCCGCGGCGGCGTGGCGGCCTTCGTCGACGCTGAGCACGCCCT
GGACCCGGTCTATGCCGCGGCCCTTGGGGTCGACATCGAAAACCTGCTGGTCTCCCAGCCGGACACCGGCGAGATGGCCC
TGGAAATCGTCGACCAACTGGTGCGCTCCGCCGCCGTTGACATCGTCGTGGTGGACTCCGTGGCCGCCCTCACCCCTCGC
TCAGAAATCGAGGGCGAAATGGGCGACCTCGCCGTCGGCAGCCAGGCCCGCCTGATGAGCCAGGCAATGCGCAAGATCAC
CGGCAACATCGGCAAGTCCGGTTGCACCGTGATCTTCTTGAACCAGTTGCGTCAAAAGATTGGCGTGACCTACGGCAACC
CCGAAACCACCACCGGTGGTAACGCCCTGAAGTTCTACGCCTCCGTGCGCCTGGACATCCGACGCATTCAGACCCTCAAG
CGCGGCACCGAAGAATTCGGCATTCGCGCGAAGGTGAAGGTGGCCAAGAACAAGGTGGCTCCGCCCTTCCGCATTGCCGA
ATTCGACATCCTGTTTGGCCGCGGAATCAGCACAGTTGGCTGCCTTCTGGACCTCGCCGAAGAACACGGCGTCGTCGTAC
GCAAAGGCGCTTGGTACAGCTACGAGGGCGACAACATCGGCCAAGGCCGCGACAACACGATCACCTGGCTCGAGCAAAAC
AGCACCGAAAAAGAAGCGATCGAGGTGAAGGTGCGCCAGAAACTCAGCGAGACCACCGACTCGCTGAAGCCCGTCGCCAC
TGCAGCCGCCAAGTTGGCCGCCTCCGGCAGCGCCAGCAGCAGCAAAGAGCAGGCCCTGCCTGCCGCCAGCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(17-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G7KLR0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

62.09

90.541

0.562
  recA Ralstonia pseudosolanacearum GMI1000

61.905

90.811

0.562
  recA Acinetobacter baylyi ADP1

63.975

87.027

0.557
  recA Acinetobacter baumannii D1279779

63.077

87.838

0.554
  recA Glaesserella parasuis strain SC1401

60.059

91.351

0.549
  recA Bacillus subtilis subsp. subtilis str. 168

61.994

86.757

0.538
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.05

91.081

0.538
  recA Vibrio cholerae strain A1552

61.18

87.027

0.532
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.18

87.027

0.532
  recA Neisseria gonorrhoeae strain FA1090

60.681

87.297

0.53
  recA Neisseria gonorrhoeae MS11

60.681

87.297

0.53
  recA Neisseria gonorrhoeae MS11

60.681

87.297

0.53
  recA Helicobacter pylori strain NCTC11637

58.841

88.649

0.522
  recA Helicobacter pylori 26695

58.841

88.649

0.522
  recA Latilactobacillus sakei subsp. sakei 23K

59.062

86.486

0.511
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.438

82.703

0.508
  recA Lactococcus lactis subsp. cremoris KW2

55.856

90

0.503
  recA Streptococcus mutans UA159

56.193

89.459

0.503
  recA Streptococcus pyogenes NZ131

52.394

95.946

0.503
  recA Streptococcus pneumoniae R6

56.402

88.649

0.5
  recA Streptococcus pneumoniae Rx1

56.402

88.649

0.5
  recA Streptococcus pneumoniae TIGR4

56.402

88.649

0.5
  recA Streptococcus pneumoniae D39

56.402

88.649

0.5
  recA Streptococcus mitis NCTC 12261

55.255

90

0.497
  recA Streptococcus mitis SK321

55.255

90

0.497
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.006

91.081

0.492