Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HZU75_RS01570 Genome accession   NZ_CP058952
Coordinates   340643..341686 (+) Length   347 a.a.
NCBI ID   WP_180307468.1    Uniprot ID   -
Organism   Chitinibacter fontanus strain STM-7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 335643..346686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZU75_RS01560 (HZU75_01560) - 337212..338471 (-) 1260 WP_180307466.1 D-amino acid dehydrogenase -
  HZU75_RS01565 (HZU75_01565) - 338707..340554 (+) 1848 WP_180307467.1 ATP-binding protein -
  HZU75_RS01570 (HZU75_01570) recA 340643..341686 (+) 1044 WP_180307468.1 recombinase RecA Machinery gene
  HZU75_RS01575 (HZU75_01575) recX 341759..342220 (+) 462 WP_180307469.1 recombination regulator RecX -
  HZU75_RS01580 (HZU75_01580) alaS 342438..345056 (+) 2619 WP_180307470.1 alanine--tRNA ligase -
  HZU75_RS01585 (HZU75_01585) - 345179..345403 (+) 225 WP_180307471.1 DUF1653 domain-containing protein -
  HZU75_RS01590 (HZU75_01590) - 345453..346358 (+) 906 WP_180307472.1 DUF808 domain-containing protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37170.78 Da        Isoelectric Point: 5.1568

>NTDB_id=466125 HZU75_RS01570 WP_180307468.1 340643..341686(+) (recA) [Chitinibacter fontanus strain STM-7]
MDDNKSKALAAALAQIERQFGKGAIMKMGDNQIENDLQVVSTGSLGLDLALGVGGLPRGRIVEIFGPESSGKTTLCLHVV
AEIQKLGGVAAYIDAENALDPIYAQKLGVNVSDMLISQPDTGEQALEIADMLVRSGGVDIIVVDSVAALTPKAEIEGEMG
DVHVGLQARLMSQALRKLTGNIKRTNTLVIFINQLRMKIGAMMPGQSPETTTGGNALKFYASVRLDIRRIGAVKKGEEII
GNQTKVKVAKNKVAPPFRVITFDILYGEGISREGEIIEQGVANKIVEKSGAWYSYNGNKIGQGLENSRQFLKDNPELADE
IIKKVRDKLIGSSLPIEMGGDDVEAAE

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=466125 HZU75_RS01570 WP_180307468.1 340643..341686(+) (recA) [Chitinibacter fontanus strain STM-7]
ATGGATGATAACAAAAGCAAAGCTCTAGCCGCGGCATTAGCACAGATTGAACGCCAATTTGGTAAAGGCGCCATCATGAA
AATGGGCGACAACCAGATTGAAAATGATCTGCAAGTCGTATCAACTGGCTCGCTAGGCTTGGACTTGGCTCTGGGCGTTG
GTGGCTTGCCACGCGGCCGGATTGTTGAAATCTTTGGGCCAGAGTCTTCAGGTAAAACCACGCTGTGTTTGCATGTGGTT
GCCGAGATTCAAAAACTGGGTGGTGTTGCCGCGTATATCGATGCGGAAAATGCGCTTGACCCAATCTACGCGCAAAAACT
TGGTGTGAACGTATCGGACATGCTGATTTCTCAGCCTGATACTGGCGAACAAGCACTCGAAATCGCCGATATGCTGGTGC
GCTCTGGTGGCGTTGACATCATCGTCGTTGACTCGGTTGCCGCATTAACACCAAAAGCCGAGATTGAAGGCGAAATGGGT
GACGTACACGTCGGCCTGCAAGCCCGCTTGATGAGCCAAGCTTTACGTAAACTGACTGGTAATATCAAACGCACCAATAC
ACTGGTAATCTTTATTAACCAGTTGCGTATGAAAATCGGCGCGATGATGCCAGGGCAAAGCCCGGAAACCACCACCGGTG
GTAATGCGCTGAAATTCTACGCTTCAGTCCGTCTCGACATTCGCCGCATTGGTGCGGTGAAAAAAGGCGAAGAAATTATT
GGTAACCAAACCAAAGTCAAAGTCGCCAAAAACAAAGTTGCACCACCATTCCGCGTGATCACGTTTGATATCCTGTACGG
CGAAGGCATTTCGCGTGAAGGCGAGATCATCGAGCAAGGCGTAGCCAATAAGATTGTCGAAAAATCCGGCGCTTGGTACA
GCTACAATGGCAACAAGATTGGTCAAGGTCTGGAAAACTCACGTCAATTCCTAAAAGATAATCCGGAATTGGCCGACGAA
ATCATCAAGAAAGTCCGCGATAAGTTGATCGGCAGCAGCTTGCCGATCGAAATGGGCGGCGATGATGTCGAAGCTGCCGA
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae MS11

73.684

98.559

0.726
  recA Neisseria gonorrhoeae MS11

73.684

98.559

0.726
  recA Neisseria gonorrhoeae strain FA1090

73.684

98.559

0.726
  recA Ralstonia pseudosolanacearum GMI1000

77.389

90.49

0.7
  recA Pseudomonas stutzeri DSM 10701

69.97

95.965

0.671
  recA Acinetobacter baylyi ADP1

66.279

99.135

0.657
  recA Glaesserella parasuis strain SC1401

68.807

94.236

0.648
  recA Vibrio cholerae strain A1552

67.879

95.101

0.646
  recA Vibrio cholerae O1 biovar El Tor strain E7946

67.879

95.101

0.646
  recA Acinetobacter baumannii D1279779

66.97

95.101

0.637
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.565

94.813

0.631
  recA Helicobacter pylori strain NCTC11637

64.865

95.965

0.622
  recA Helicobacter pylori 26695

64.565

95.965

0.62
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.363

95.965

0.608
  recA Latilactobacillus sakei subsp. sakei 23K

61.493

96.542

0.594
  recA Bacillus subtilis subsp. subtilis str. 168

62.963

93.372

0.588
  recA Streptococcus mutans UA159

60.976

94.524

0.576
  recA Streptococcus pyogenes NZ131

59.517

95.389

0.568
  recA Lactococcus lactis subsp. cremoris KW2

60.061

94.524

0.568
  recA Streptococcus pneumoniae R6

58.663

94.813

0.556
  recA Streptococcus pneumoniae TIGR4

58.663

94.813

0.556
  recA Streptococcus pneumoniae Rx1

58.663

94.813

0.556
  recA Streptococcus pneumoniae D39

58.663

94.813

0.556
  recA Streptococcus mitis NCTC 12261

58.896

93.948

0.553
  recA Streptococcus mitis SK321

58.589

93.948

0.55
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.839

94.813

0.539