Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SSU16085_RS00405 Genome accession   NZ_CP058740
Coordinates   73461..74612 (+) Length   383 a.a.
NCBI ID   WP_024387809.1    Uniprot ID   -
Organism   Streptococcus suis strain 16085/3b     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 68461..79612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU16085_RS00385 (SSU16085_00081) mutL 68802..70739 (+) 1938 WP_004194473.1 DNA mismatch repair endonuclease MutL -
  SSU16085_RS00390 (SSU16085_00082) ruvA 70778..71368 (+) 591 WP_015646243.1 Holliday junction branch migration protein RuvA -
  SSU16085_RS00395 (SSU16085_00083) - 71622..72191 (+) 570 WP_024394300.1 DNA-3-methyladenine glycosylase I -
  SSU16085_RS00400 (SSU16085_00084) cinA 72228..73409 (+) 1182 WP_024394301.1 competence/damage-inducible protein A Machinery gene
  SSU16085_RS00405 (SSU16085_00085) recA 73461..74612 (+) 1152 WP_024387809.1 recombinase RecA Machinery gene
  SSU16085_RS00410 (SSU16085_00086) spx 74848..75246 (+) 399 WP_002939362.1 transcriptional regulator Spx -
  SSU16085_RS00415 (SSU16085_00087) - 75346..75612 (+) 267 WP_002939360.1 IreB family regulatory phosphoprotein -
  SSU16085_RS00420 (SSU16085_00088) ruvX 75612..76031 (+) 420 WP_032513707.1 Holliday junction resolvase RuvX -
  SSU16085_RS00425 (SSU16085_00089) - 76043..76363 (+) 321 WP_002939343.1 DUF1292 domain-containing protein -
  SSU16085_RS00430 (SSU16085_00090) rpsJ 76901..77209 (+) 309 WP_014735259.1 30S ribosomal protein S10 -
  SSU16085_RS00435 (SSU16085_00091) rplC 77422..78048 (+) 627 WP_011921686.1 50S ribosomal protein L3 -
  SSU16085_RS00440 (SSU16085_00092) rplD 78073..78696 (+) 624 WP_004195490.1 50S ribosomal protein L4 -
  SSU16085_RS00445 (SSU16085_00093) - 78696..78995 (+) 300 WP_004195491.1 50S ribosomal protein L23 -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 40904.65 Da        Isoelectric Point: 4.8910

>NTDB_id=465124 SSU16085_RS00405 WP_024387809.1 73461..74612(+) (recA) [Streptococcus suis strain 16085/3b]
MAKKPTKKLEDITKKFGDERKKALDDALKSIEKDFGKGAVMRLGERAEQKVQVMSSGSLSIDIALGAGGYPKGRIIEIYG
PESSGKTTVALHAVAQAQKDGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSV
AALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTVAIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDVR
GNTQIKGTGDKKDQNVGKETKVKIVKNKVAPPFKEAVVEIMYGEGISRTGELIEIGSNLGIIQKAGAWYSYNGEKIGQGS
ENAKKFLADNPAIFDEIDRKIRVHYGLIEADGVEEVATEEAPVVAEEIQDVILDLDGGIELED

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=465124 SSU16085_RS00405 WP_024387809.1 73461..74612(+) (recA) [Streptococcus suis strain 16085/3b]
TTGGCTAAGAAACCAACTAAGAAATTAGAAGATATTACAAAGAAATTTGGCGATGAGCGTAAAAAAGCGCTGGATGATGC
CCTAAAATCAATTGAAAAAGATTTTGGTAAGGGTGCTGTTATGCGTCTTGGTGAGCGTGCTGAACAAAAAGTTCAAGTCA
TGAGCTCAGGTAGTTTGTCAATCGACATTGCGCTTGGAGCGGGTGGCTATCCGAAAGGTCGTATCATTGAGATTTACGGT
CCAGAGAGCTCAGGTAAGACAACTGTTGCTCTACACGCAGTAGCTCAAGCCCAGAAAGATGGTGGTATTGCTGCCTTTAT
CGATGCGGAGCATGCCTTGGATCCAGCCTATGCAGCAGCTCTTGGTGTCAATATTGATGAGTTACTCTTGTCCCAGCCAG
ACTCAGGGGAACAAGGTCTTGAAATTGCAGGCAAGCTGATCGACTCTGGTGCGGTTGATTTGGTTGTTGTTGACTCGGTT
GCAGCCCTTGTACCACGTGCAGAAATTGATGGCGATATTGGTGATAGTCATGTTGGTTTGCAGGCTCGCATGATGAGTCA
GGCCATGCGCAAACTCGGTGCATCCATCAACAAAACTAAGACAGTAGCTATTTTCATCAACCAATTGCGTGAAAAAGTCG
GTGTCATGTTTGGTAACCCTGAAACAACCCCTGGTGGACGTGCGCTTAAATTCTATGCATCTGTTCGTATGGATGTTCGT
GGAAACACACAAATCAAAGGAACAGGCGACAAGAAAGATCAAAACGTTGGTAAGGAAACCAAGGTGAAGATCGTGAAGAA
CAAGGTGGCGCCACCATTTAAAGAAGCTGTTGTTGAAATCATGTACGGTGAAGGAATTTCTCGCACAGGTGAATTGATTG
AGATTGGTAGCAACCTCGGCATCATCCAAAAAGCAGGTGCTTGGTATTCATATAATGGAGAAAAAATTGGCCAAGGTTCT
GAAAATGCTAAGAAATTCTTAGCAGATAATCCAGCAATCTTTGATGAAATTGACCGCAAGATTCGTGTTCATTATGGCTT
GATTGAAGCAGATGGAGTTGAAGAAGTTGCGACCGAAGAAGCTCCTGTTGTTGCGGAAGAAATCCAAGATGTTATCCTAG
ATCTTGATGGCGGTATTGAATTAGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mutans UA159

85.938

100

0.862
  recA Streptococcus pyogenes NZ131

84.856

100

0.849
  recA Streptococcus pneumoniae R6

83.161

100

0.838
  recA Streptococcus pneumoniae Rx1

83.161

100

0.838
  recA Streptococcus pneumoniae D39

83.161

100

0.838
  recA Streptococcus pneumoniae TIGR4

83.161

100

0.838
  recA Streptococcus mitis NCTC 12261

83.77

99.739

0.836
  recA Streptococcus mitis SK321

82.984

99.739

0.828
  recA Lactococcus lactis subsp. cremoris KW2

75.143

91.384

0.687
  recA Latilactobacillus sakei subsp. sakei 23K

63.585

93.211

0.593
  recA Bacillus subtilis subsp. subtilis str. 168

68.085

85.901

0.585
  recA Acinetobacter baumannii D1279779

60.116

90.339

0.543
  recA Neisseria gonorrhoeae MS11

62.236

86.423

0.538
  recA Neisseria gonorrhoeae MS11

62.236

86.423

0.538
  recA Neisseria gonorrhoeae strain FA1090

62.236

86.423

0.538
  recA Pseudomonas stutzeri DSM 10701

57.224

92.167

0.527
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.479

87.206

0.527
  recA Glaesserella parasuis strain SC1401

59.118

88.773

0.525
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.944

89.034

0.525
  recA Acinetobacter baylyi ADP1

61.538

84.856

0.522
  recA Vibrio cholerae strain A1552

61.538

84.856

0.522
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.538

84.856

0.522
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.61

86.423

0.507
  recA Ralstonia pseudosolanacearum GMI1000

60.568

82.768

0.501
  recA Helicobacter pylori strain NCTC11637

57.879

86.162

0.499
  recA Helicobacter pylori 26695

57.879

86.162

0.499