Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   JNE32_RS06125 Genome accession   NZ_CP068982
Coordinates   1184080..1185909 (+) Length   609 a.a.
NCBI ID   WP_174243753.1    Uniprot ID   -
Organism   Bacillus subtilis strain pb2441     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1179080..1190909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNE32_RS06090 (JNE32_06060) yjbC 1179753..1180331 (+) 579 WP_003244921.1 GNAT family N-acetyltransferase -
  JNE32_RS06095 (JNE32_06065) spx 1180512..1180907 (+) 396 WP_003245483.1 transcriptional regulator Spx -
  JNE32_RS06100 (JNE32_06070) yjbE 1180950..1181606 (-) 657 WP_003232944.1 TerC family protein -
  JNE32_RS06105 (JNE32_06075) - 1181776..1181916 (+) 141 WP_121572562.1 hypothetical protein -
  JNE32_RS06110 (JNE32_06080) mecA 1181883..1182539 (+) 657 WP_015383354.1 adaptor protein MecA Regulator
  JNE32_RS06115 (JNE32_06085) - 1182534..1182655 (-) 122 Protein_1139 hypothetical protein -
  JNE32_RS06120 (JNE32_06090) coiA 1182699..1183850 (+) 1152 WP_029726275.1 competence protein CoiA Machinery gene
  JNE32_RS06125 (JNE32_06095) pepF 1184080..1185909 (+) 1830 WP_174243753.1 oligoendopeptidase F Regulator
  JNE32_RS06130 (JNE32_06100) - 1185947..1186114 (-) 168 WP_003244944.1 hypothetical protein -
  JNE32_RS06135 (JNE32_06105) spxH 1186429..1187328 (-) 900 WP_003245184.1 protease adaptor protein SpxH -
  JNE32_RS06140 (JNE32_06110) bhbI 1187325..1187723 (-) 399 WP_003232928.1 group 2 truncated hemoglobin YjbI -
  JNE32_RS06145 (JNE32_06115) cwlQ 1187978..1188712 (-) 735 WP_029726274.1 bifunctional muramidase/murein lytic transglycosylase -
  JNE32_RS06150 (JNE32_06120) yjbK 1188727..1189299 (-) 573 WP_014479452.1 CYTH domain-containing protein -
  JNE32_RS06155 (JNE32_06125) - 1189424..1189792 (+) 369 WP_038427600.1 hypothetical protein -
  JNE32_RS06160 (JNE32_06130) yjbM 1189821..1190456 (+) 636 WP_003245294.1 GTP diphosphokinase -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 70135.02 Da        Isoelectric Point: 5.1562

>NTDB_id=463988 JNE32_RS06125 WP_174243753.1 1184080..1185909(+) (pepF) [Bacillus subtilis strain pb2441]
MAEEKKANQLPDRSEVKAEDTWRLEDIFPSDEAWNKEFQAVKELIPNLSKYKGKLADSADHLYEALTYQDKVMERLGRLY
TYAHMRSDQDTGNSFYQGLNDKAGNLYTQAASATAYLVPEILSIEEDKLQQFILEKEELKLYSHAIEEITKERPHVLSEK
EEALLAEASEVLGSSSNTFSVLNNADITFPSIKDEDGNEKQITHGNFINFLESENREVRKNAFDAVYKTYGQYKNTMATT
LSGTVKKDNFYARVKKYKSAREAALSNNSIPEEVYDNLVKTINKHLPLLHRYIALRKKVLELDEVHIYDLYTPLVKDAGM
KVTYEEAKDYMLKGLAPLGEEYASILKEGLENRWVDVYENKGKRNGAYSSGAYGTNPYILMNWHNYVNNLFTLVHEFGHS
VHSYYTRKHQPYPYGNYSIFVAEVASTTNEALLGEYLLNNLEDEKQRLYILNHMLEGFRGTVFRQTMFAEFEHLIHTKAQ
EGEPLTPELLTNVYYDLNKKYFGDGMVIDKEIGLEWSRIPHFYYNYYVYQYATGYSAAQALSSQILKEGKPAVDRYIDFL
KAGSSQYPIDVLKKAGVDMTSPEPIEAACKMFEEKLDEMEELLMKVKQS

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=463988 JNE32_RS06125 WP_174243753.1 1184080..1185909(+) (pepF) [Bacillus subtilis strain pb2441]
ATGGCTGAGGAAAAAAAAGCAAACCAACTGCCTGACAGAAGTGAGGTAAAGGCAGAAGACACATGGAGACTTGAGGATAT
TTTTCCTAGTGATGAGGCCTGGAATAAAGAATTTCAAGCTGTAAAAGAATTAATTCCGAATTTATCTAAGTATAAAGGAA
AGCTGGCAGATTCAGCTGATCATTTATACGAGGCTCTTACGTATCAAGATAAAGTGATGGAGCGGCTGGGTAGGCTGTAC
ACATATGCGCATATGCGCTCTGACCAGGATACTGGGAACTCCTTTTACCAGGGGCTGAATGACAAGGCGGGAAACCTGTA
TACACAGGCCGCAAGCGCGACAGCTTATTTGGTTCCGGAGATTTTATCCATAGAAGAAGACAAACTGCAGCAGTTCATTC
TTGAAAAAGAAGAATTAAAGCTGTACTCTCATGCGATTGAGGAGATTACAAAGGAACGTCCGCATGTGCTGAGCGAGAAG
GAAGAGGCACTGCTTGCTGAAGCCTCCGAGGTACTGGGGTCATCTTCAAATACATTCAGTGTGTTAAATAACGCAGATAT
AACGTTTCCATCCATTAAAGACGAAGATGGGAATGAAAAACAGATCACTCACGGCAACTTTATTAATTTCTTGGAAAGTG
AAAACCGTGAAGTCCGCAAAAATGCGTTTGACGCAGTGTATAAAACGTACGGACAATATAAAAACACAATGGCCACGACG
CTAAGCGGCACTGTGAAAAAGGACAACTTCTACGCGAGAGTGAAAAAGTACAAGTCCGCGCGTGAGGCTGCGCTTTCTAA
CAACAGTATTCCTGAGGAAGTATACGATAACCTTGTTAAGACGATTAATAAGCATTTGCCGCTCCTGCACCGCTATATTG
CGCTAAGAAAGAAAGTGCTTGAGCTTGATGAAGTGCATATCTATGACCTGTATACACCGCTTGTGAAAGATGCTGGGATG
AAGGTGACATACGAGGAAGCCAAAGATTACATGCTGAAAGGCCTCGCACCTTTAGGGGAAGAATATGCCTCTATCCTAAA
AGAAGGACTGGAAAACCGCTGGGTGGACGTTTACGAAAATAAAGGCAAACGCAATGGGGCTTATTCATCAGGAGCTTACG
GCACGAATCCGTATATTTTGATGAACTGGCATAATTACGTCAATAATCTCTTTACGCTTGTGCACGAGTTTGGACATTCC
GTACACAGCTACTATACGAGAAAGCACCAGCCTTATCCATACGGCAATTACAGCATCTTTGTCGCGGAAGTTGCCTCTAC
GACAAATGAAGCGCTCCTTGGCGAATATTTGCTGAACAATTTAGAGGATGAAAAACAGCGCTTATATATTCTCAACCATA
TGCTTGAGGGCTTCAGGGGAACGGTTTTCAGACAAACGATGTTCGCTGAATTTGAACATCTGATCCATACAAAGGCGCAA
GAAGGCGAGCCGCTTACACCTGAGCTTCTGACAAATGTCTATTACGACCTGAATAAAAAGTATTTTGGAGACGGCATGGT
GATTGATAAGGAAATCGGCCTTGAATGGTCGCGTATTCCGCACTTCTATTACAATTACTATGTGTATCAGTATGCGACAG
GGTACAGCGCTGCCCAAGCATTAAGCAGCCAGATTTTGAAGGAAGGAAAGCCGGCGGTTGACCGTTATATTGACTTCCTG
AAAGCGGGAAGCTCACAATACCCGATTGATGTCCTGAAAAAAGCGGGTGTTGATATGACGTCTCCAGAGCCAATCGAAGC
CGCGTGCAAAATGTTTGAAGAAAAACTTGATGAAATGGAAGAGCTGCTGATGAAAGTCAAGCAGTCTTAA

Domains

Predicted by InterProScan.

Peptidase family M3 (Peptidase_M3)

(211-590)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

48.822

97.537

0.476