Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HW090_RS04820 Genome accession   NZ_CP058349
Coordinates   1091672..1092718 (-) Length   348 a.a.
NCBI ID   WP_179112403.1    Uniprot ID   A0A7L5RR95
Organism   Pseudomonas sp. ABC1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1086672..1097718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HW090_RS04800 (HW090_04800) dnaJ 1087205..1088326 (-) 1122 WP_179112400.1 molecular chaperone DnaJ -
  HW090_RS04805 (HW090_04805) dnaK 1088449..1090362 (-) 1914 WP_179112401.1 molecular chaperone DnaK -
  HW090_RS04810 (HW090_04810) grpE 1090459..1091028 (-) 570 WP_179112402.1 nucleotide exchange factor GrpE -
  HW090_RS04815 (HW090_04815) recX 1091215..1091679 (-) 465 WP_179114834.1 recombination regulator RecX -
  HW090_RS04820 (HW090_04820) recA 1091672..1092718 (-) 1047 WP_179112403.1 recombinase RecA Machinery gene
  HW090_RS04825 (HW090_04825) - 1092861..1093433 (-) 573 WP_373416381.1 CinA family protein -
  HW090_RS04830 (HW090_04830) - 1093541..1094701 (+) 1161 WP_179112404.1 GGDEF domain-containing protein -
  HW090_RS04835 (HW090_04835) mutS 1094735..1097308 (+) 2574 WP_179112405.1 DNA mismatch repair protein MutS -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 36872.02 Da        Isoelectric Point: 5.2881

>NTDB_id=463988 HW090_RS04820 WP_179112403.1 1091672..1092718(-) (recA) [Pseudomonas sp. ABC1]
MDENKKRALAAALGQIEKQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
EAQKQGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
AHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYRSGEVIDLGVQQGLIEKSGAWYSYQGSKIGQGKANAAKYLEDNPDVGSAVEQ
LIRDKLLVASANTSKGNASVDDALDSDA

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=463988 HW090_RS04820 WP_179112403.1 1091672..1092718(-) (recA) [Pseudomonas sp. ABC1]
ATGGACGAGAACAAGAAGCGCGCCTTGGCTGCTGCCCTGGGCCAGATCGAGAAACAGTTCGGCAAAGGTGCGGTGATGCG
CATGGGCGACCATGATCGCCAGGCTATTCCGGCCATTTCCACAGGCTCGCTGGGGCTGGACATCGCCCTGGGTATCGGTG
GCCTGCCCAAGGGTCGTATCGTCGAGATCTATGGCCCGGAGTCGTCGGGCAAGACCACGCTGACCCTGTCCGTCATCGCT
GAAGCCCAGAAGCAGGGTGCCACTTGTGCCTTCGTCGACGCCGAGCACGCGCTGGATCCGGACTATGCCGGCAAGCTGGG
CGTCAATGTCGACGACCTGCTGGTTTCCCAGCCGGATACCGGTGAGCAGGCGCTGGAAATCACCGACATGCTGGTGCGTT
CGAACGCCGTCGACGTGATCATCGTCGACTCCGTGGCTGCGCTGGTGCCCAAGGCCGAGATCGAAGGCGAGATGGGCGAT
GCCCACGTCGGCCTGCAGGCTCGCCTGATGTCCCAGGCGCTGCGCAAGATCACCGGCAACATCAAGAATGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGTATGAAGATCGGTGTGATGTTCGGCAGCCCGGAAACCACTACCGGTGGTAACGCGC
TGAAGTTCTACGCCTCGGTACGCCTGGACATCCGCCGTACCGGCGCAGTGAAGGAGGGTGACGAGGTCGTCGGCAGCGAA
ACGCGAGTCAAGGTCGTCAAGAACAAGGTGGCACCGCCTTTCCGCCAGGCCGAGTTCCAGATTCTCTATGGCAAGGGCAT
CTACCGCAGCGGCGAAGTCATCGACCTCGGTGTACAGCAAGGGCTGATCGAGAAGTCCGGCGCCTGGTACAGCTACCAGG
GCAGCAAGATTGGTCAGGGCAAGGCCAATGCCGCCAAGTACCTGGAAGACAACCCGGATGTGGGCAGTGCCGTCGAGCAG
TTGATTCGCGATAAGTTGCTGGTCGCTTCCGCGAACACCAGCAAAGGCAATGCATCCGTGGATGACGCGCTCGACAGCGA
TGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7L5RR95

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

91.643

99.713

0.914
  recA Acinetobacter baumannii D1279779

72.622

99.713

0.724
  recA Acinetobacter baylyi ADP1

72.754

99.138

0.721
  recA Vibrio cholerae strain A1552

74.312

93.966

0.698
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.312

93.966

0.698
  recA Glaesserella parasuis strain SC1401

71.81

96.839

0.695
  recA Ralstonia pseudosolanacearum GMI1000

69.88

95.402

0.667
  recA Neisseria gonorrhoeae MS11

70.988

93.103

0.661
  recA Neisseria gonorrhoeae MS11

70.988

93.103

0.661
  recA Neisseria gonorrhoeae strain FA1090

70.988

93.103

0.661
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.303

93.966

0.595
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.976

95.977

0.595
  recA Helicobacter pylori strain NCTC11637

62.385

93.966

0.586
  recA Helicobacter pylori 26695

61.774

93.966

0.58
  recA Bacillus subtilis subsp. subtilis str. 168

61.994

92.241

0.572
  recA Streptococcus mutans UA159

56.695

100

0.572
  recA Latilactobacillus sakei subsp. sakei 23K

61.682

92.241

0.569
  recA Streptococcus pyogenes NZ131

58.537

94.253

0.552
  recA Streptococcus mitis SK321

58.951

93.103

0.549
  recA Streptococcus mitis NCTC 12261

58.642

93.103

0.546
  recA Streptococcus pneumoniae Rx1

58.282

93.678

0.546
  recA Streptococcus pneumoniae D39

58.282

93.678

0.546
  recA Streptococcus pneumoniae R6

58.282

93.678

0.546
  recA Streptococcus pneumoniae TIGR4

58.282

93.678

0.546
  recA Lactococcus lactis subsp. cremoris KW2

57.585

92.816

0.534
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.402

94.253

0.532