Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HW988_RS02380 Genome accession   NZ_CP058348
Coordinates   465618..466763 (+) Length   381 a.a.
NCBI ID   WP_181606066.1    Uniprot ID   -
Organism   Bdellovibrio sp. KM01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 460618..471763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HW988_RS02355 (HW988_02355) - 460764..461915 (-) 1152 WP_181606062.1 metallophosphoesterase -
  HW988_RS02360 (HW988_02360) - 462025..463734 (+) 1710 WP_181606063.1 AMP-binding protein -
  HW988_RS02365 (HW988_02365) - 463879..464181 (+) 303 WP_142698827.1 KH domain-containing protein -
  HW988_RS02370 (HW988_02370) - 464522..465001 (+) 480 WP_181606064.1 phosphatidylglycerophosphatase A -
  HW988_RS02375 (HW988_02375) - 465002..465490 (+) 489 WP_181606065.1 CinA family protein -
  HW988_RS02380 (HW988_02380) recA 465618..466763 (+) 1146 WP_181606066.1 recombinase RecA Machinery gene
  HW988_RS02385 (HW988_02385) - 466887..467630 (+) 744 WP_181606067.1 ABC transporter substrate-binding protein -
  HW988_RS02390 (HW988_02390) - 467993..468535 (-) 543 WP_181606068.1 hypothetical protein -
  HW988_RS02395 (HW988_02395) - 468691..468927 (+) 237 WP_181606069.1 hypothetical protein -
  HW988_RS02400 (HW988_02400) - 468981..469661 (-) 681 WP_181606070.1 hypothetical protein -
  HW988_RS02405 (HW988_02405) - 469992..470390 (+) 399 WP_181606071.1 DUF2388 domain-containing protein -
  HW988_RS02410 (HW988_02410) - 470394..470804 (-) 411 WP_181606072.1 hypothetical protein -
  HW988_RS02415 (HW988_02415) - 470964..471263 (-) 300 WP_181606073.1 hypothetical protein -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 40781.73 Da        Isoelectric Point: 5.8015

>NTDB_id=463977 HW988_RS02380 WP_181606066.1 465618..466763(+) (recA) [Bdellovibrio sp. KM01]
MANTTVADAKAQNEKNKALELAVSSIEKQFGKGSIMRLGANDSLVKDVEAISTGALSLDLALGIGGLPKGRIVEIYGPES
SGKTTLCLSVIAQAQKKGGVVAFVDAEHALDINYARKLGVNTEDMLISQPDTGEQALEIVETLVRSGAIDVLVVDSVAAL
VPRAEIEGDMGDSHVGLQARLMSQALRKLTAAVNRSNTLVIFINQLRMKIGVMFGNPETTTGGNALKFYSSVRLDVRRVG
AIKDGEDVTGNRTAVKVVKNKMAPPFTKVEFDLMYGEGISEEGDLLDLAVTANMVEKSGAWFSINGERMGQGRDAAKTFL
KQHPEYMTQLRTKILAANGIGKLLVDAEMAKDGEDHEGTEPTEMPTEDAAPKKEKVKKGKH

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=463977 HW988_RS02380 WP_181606066.1 465618..466763(+) (recA) [Bdellovibrio sp. KM01]
ATGGCAAACACAACTGTGGCAGATGCAAAAGCACAAAACGAAAAAAACAAAGCCTTGGAATTGGCAGTTTCATCTATTGA
AAAGCAATTCGGTAAAGGTTCAATCATGCGTTTGGGCGCTAACGATTCTTTGGTTAAAGACGTTGAGGCGATCAGCACGG
GCGCATTGAGCTTGGATTTGGCTCTTGGTATCGGCGGTCTTCCTAAAGGTCGTATCGTAGAAATCTACGGACCTGAATCT
TCTGGTAAAACAACTCTTTGCTTGTCTGTTATCGCTCAAGCTCAGAAAAAAGGTGGCGTTGTTGCATTCGTGGATGCTGA
GCATGCATTGGATATCAACTACGCTCGTAAATTGGGTGTGAACACTGAAGACATGTTGATCTCTCAACCAGACACTGGTG
AGCAAGCTCTTGAGATCGTGGAAACTTTGGTTCGCTCTGGCGCGATCGACGTATTGGTTGTCGACTCCGTAGCAGCGTTG
GTTCCTCGTGCAGAGATCGAAGGCGACATGGGGGATTCTCACGTAGGTCTTCAAGCTCGCTTGATGTCTCAAGCTCTTCG
TAAATTGACTGCCGCTGTAAACCGTTCCAACACACTAGTTATCTTCATCAACCAACTTCGTATGAAAATCGGTGTGATGT
TCGGTAACCCAGAAACAACTACTGGTGGTAACGCGTTGAAATTCTATTCTTCTGTTCGTTTGGATGTACGCCGTGTGGGC
GCGATCAAAGACGGTGAAGACGTAACTGGTAACCGTACTGCAGTTAAAGTTGTGAAAAACAAAATGGCTCCTCCGTTCAC
TAAAGTTGAATTCGACTTGATGTACGGTGAAGGTATTTCTGAAGAAGGCGATTTGCTGGATCTAGCAGTGACTGCAAATA
TGGTTGAAAAATCTGGCGCATGGTTCTCCATCAATGGCGAGCGTATGGGTCAAGGCCGTGATGCTGCGAAAACATTCTTG
AAGCAACATCCAGAGTACATGACACAATTGCGTACTAAGATCTTGGCAGCTAACGGTATCGGCAAACTTTTGGTTGATGC
TGAAATGGCTAAAGACGGTGAAGACCATGAAGGTACTGAGCCAACTGAAATGCCAACAGAAGACGCAGCTCCGAAAAAAG
AAAAAGTTAAAAAAGGTAAGCACTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(17-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Glaesserella parasuis strain SC1401

64.525

93.963

0.606
  recA Neisseria gonorrhoeae MS11

67.378

86.089

0.58
  recA Neisseria gonorrhoeae strain FA1090

67.378

86.089

0.58
  recA Neisseria gonorrhoeae MS11

67.378

86.089

0.58
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.464

91.601

0.572
  recA Pseudomonas stutzeri DSM 10701

64.653

86.877

0.562
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.875

83.99

0.562
  recA Vibrio cholerae strain A1552

66.875

83.99

0.562
  recA Ralstonia pseudosolanacearum GMI1000

64.545

86.614

0.559
  recA Acinetobacter baylyi ADP1

65.217

84.514

0.551
  recA Bacillus subtilis subsp. subtilis str. 168

63.11

86.089

0.543
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.236

86.877

0.541
  recA Streptococcus pneumoniae R6

55.978

96.588

0.541
  recA Streptococcus pneumoniae TIGR4

55.978

96.588

0.541
  recA Streptococcus pneumoniae Rx1

55.978

96.588

0.541
  recA Streptococcus pneumoniae D39

55.978

96.588

0.541
  recA Acinetobacter baumannii D1279779

64.062

83.99

0.538
  recA Helicobacter pylori strain NCTC11637

63.354

84.514

0.535
  recA Helicobacter pylori 26695

62.733

84.514

0.53
  recA Latilactobacillus sakei subsp. sakei 23K

60.606

86.614

0.525
  recA Streptococcus mitis SK321

57.471

91.339

0.525
  recA Streptococcus mitis NCTC 12261

58.407

88.976

0.52
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.55

85.827

0.52
  recA Lactococcus lactis subsp. cremoris KW2

57.185

89.501

0.512
  recA Streptococcus pyogenes NZ131

59.816

85.564

0.512
  recA Streptococcus mutans UA159

58.434

87.139

0.509